Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00523
         (618 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0725 + 19749227-19749361,19749705-19749772,19749869-197499...    28   6.8  
01_06_0928 + 33085403-33089224                                         28   6.8  

>09_04_0725 +
           19749227-19749361,19749705-19749772,19749869-19749938,
           19750244-19751482,19755359-19755423,19755502-19755655,
           19755725-19755733
          Length = 579

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +1

Query: 343 IMGCNYHQSTDIIAGYSLPAGPSQ*P-DSSGSLELQ*VSMSVHIVGGLPKMTIQGSFLFL 519
           ++G NYH+   +   Y+LPA  S     SS +L L+   +++  V  + +M +   F  L
Sbjct: 10  LLGLNYHELQSLCKQYNLPANKSHSQLASSLALFLEVAKVAIKEVRKVKEMMVIDLFCML 69

Query: 520 L 522
           L
Sbjct: 70  L 70


>01_06_0928 + 33085403-33089224
          Length = 1273

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +3

Query: 501 RVIFISTYLTSCLHFMIAENNQMVTLNIIK 590
           RV+++S Y T+ L   IAE N +  LNIIK
Sbjct: 561 RVLYLSFYNTTNLPESIAELNHLRYLNIIK 590


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,440,640
Number of Sequences: 37544
Number of extensions: 235331
Number of successful extensions: 308
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 308
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)