Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00523
         (618 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69884-10|CAA93753.1|  400|Caenorhabditis elegans Hypothetical p...    29   2.7  
Z69883-7|CAA93745.1|  400|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AF047658-4|AAC04417.1|  392|Caenorhabditis elegans Hypothetical ...    28   6.1  
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    27   8.1  

>Z69884-10|CAA93753.1|  400|Caenorhabditis elegans Hypothetical
           protein C27C12.3 protein.
          Length = 400

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 584 NV*CNHLIIFCDHKMKTGC*ISRNKNDPCMVILGKPPTIW 465
           NV  NH ++    +      IS NKN   +++ G P TIW
Sbjct: 213 NVRSNHRVLEVARETMNSSDISPNKNTSSVLLDGSPSTIW 252


>Z69883-7|CAA93745.1|  400|Caenorhabditis elegans Hypothetical
           protein C27C12.3 protein.
          Length = 400

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 584 NV*CNHLIIFCDHKMKTGC*ISRNKNDPCMVILGKPPTIW 465
           NV  NH ++    +      IS NKN   +++ G P TIW
Sbjct: 213 NVRSNHRVLEVARETMNSSDISPNKNTSSVLLDGSPSTIW 252


>AF047658-4|AAC04417.1|  392|Caenorhabditis elegans Hypothetical
           protein K03H6.1 protein.
          Length = 392

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 336 CYYNGMQLSSVYRHHCWI*P 395
           CYY+GM+    YR+  W+ P
Sbjct: 195 CYYSGMRHQKTYRNKDWVTP 214


>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
           protein Y40C5A.3 protein.
          Length = 2344

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = -2

Query: 524 ISRNKNDPCMVILGKPPT---IWTDILTY*SSREP 429
           IS++  DP MVI  KPPT   IW       +S EP
Sbjct: 12  ISKSFGDPPMVITAKPPTSPNIWLGSNDLKTSNEP 46


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,693,127
Number of Sequences: 27780
Number of extensions: 242187
Number of successful extensions: 410
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)