Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00523
         (618 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           24   1.4  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           24   1.4  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    23   3.2  
DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              23   3.2  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    23   3.2  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   5.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   5.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   5.5  

>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 79  NNFVILTSYKGTYPYYVTYFFSFFD 5
           +   ++T++   YP Y  YF +F D
Sbjct: 46  SGIAVMTAFFKKYPEYQRYFTAFMD 70


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 79  NNFVILTSYKGTYPYYVTYFFSFFD 5
           +   ++T++   YP Y  YF +F D
Sbjct: 46  SGIAVMTAFFKKYPEYQRYFTAFMD 70


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 122 LSHVNWLYI*KLYSE*FCYFNL 57
           LS + W Y  +LYS+ + Y N+
Sbjct: 11  LSLLTWTYAEELYSDKYDYVNI 32


>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 20  KIGHVVWVCSLIGG*NNKIILSIIFKCIT 106
           +I  ++  CS I   N  + ++ IF+CIT
Sbjct: 96  EINQLITECSAISDTNVHLKITKIFQCIT 124


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 122 LSHVNWLYI*KLYSE*FCYFNL 57
           LS + W Y  +LYS+ + Y N+
Sbjct: 11  LSLLTWTYAEELYSDKYDYVNI 32


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 360 IIASHYNNKWFKLNL 316
           +IA HY   WF L+L
Sbjct: 159 LIAKHYLRTWFFLDL 173


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 360 IIASHYNNKWFKLNL 316
           +IA HY   WF L+L
Sbjct: 159 LIAKHYLRTWFFLDL 173


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 360 IIASHYNNKWFKLNL 316
           +IA HY   WF L+L
Sbjct: 159 LIAKHYLRTWFFLDL 173


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,910
Number of Sequences: 438
Number of extensions: 3377
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)