Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00522
(645 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.) 132 2e-31
SB_1215| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_51145| Best HMM Match : RCSD (HMM E-Value=1.3) 28 5.7
SB_28528| Best HMM Match : TUDOR (HMM E-Value=0.34) 28 5.7
SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09) 28 5.7
SB_20414| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_39529| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_6214| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_51421| Best HMM Match : VWA (HMM E-Value=3.5e-27) 27 9.9
SB_51402| Best HMM Match : Peptidase_M13_N (HMM E-Value=1.9e-12) 27 9.9
SB_46036| Best HMM Match : PSRT (HMM E-Value=1) 27 9.9
SB_40626| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_2130| Best HMM Match : fn2 (HMM E-Value=2.7e-15) 27 9.9
>SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 224
Score = 132 bits (320), Expect = 2e-31
Identities = 59/80 (73%), Positives = 70/80 (87%)
Frame = +1
Query: 13 RVRMSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAV 192
+V + +L+LQKRLAAS+++CGKKK+WLDPNE NEIAN NSRQN+RK+IKDGL+IKKP V
Sbjct: 26 KVHVGTLRLQKRLAASLLKCGKKKIWLDPNECNEIANANSRQNVRKLIKDGLIIKKPEIV 85
Query: 193 HSRARVRKNTEARRKGRHCG 252
HSRARVRK EAR KGRH G
Sbjct: 86 HSRARVRKADEARSKGRHSG 105
Score = 130 bits (315), Expect = 7e-31
Identities = 63/94 (67%), Positives = 70/94 (74%)
Frame = +3
Query: 234 KGSSLWLGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNV 413
KG GKR+GTANARMPQK +W AKKID H+YHSLYMK+KGNV
Sbjct: 100 KGRHSGHGKRKGTANARMPQKTIWIRRMRVLRRLLRKYREAKKIDNHMYHSLYMKSKGNV 159
Query: 414 FKNKRVLMEYIHRKKAEKARTKMLSDQAEARRIK 515
FKNKRVLMEYIH+KKAEKAR+K+LSDQAEARR K
Sbjct: 160 FKNKRVLMEYIHKKKAEKARSKLLSDQAEARRNK 193
>SB_1215| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1033
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -3
Query: 322 TLCLCTHSSFCGIRALAVPLLLPSHSDDPFYVPLCFCGHG 203
TLC+ H S C L + L + HS + LC GHG
Sbjct: 408 TLCIGGHGSAC----LTITLCIGGHSSACLTITLCIGGHG 443
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -3
Query: 322 TLCLCTHSSFCGIRALAVPLLLPSHSDDPFYVPLCFCGHG 203
TLC+ HSS C L + L + H + LC GHG
Sbjct: 422 TLCIGGHSSAC----LTITLCIGGHGSARHTITLCIGGHG 457
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -3
Query: 322 TLCLCTHSSFCGIRALAVPLLLPSHSDDPFYVPLCFCGHG 203
TLC+ HSS C L + L + H + LC GHG
Sbjct: 674 TLCIGGHSSAC----LTITLCIGGHGSARHTITLCIGGHG 709
>SB_51145| Best HMM Match : RCSD (HMM E-Value=1.3)
Length = 248
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = -3
Query: 568 FLLLGGNTFLAALAC 524
F L+GG TFLAALAC
Sbjct: 70 FALMGGLTFLAALAC 84
>SB_28528| Best HMM Match : TUDOR (HMM E-Value=0.34)
Length = 736
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 414 FKNKRVLMEYIHRKKAEKARTKMLSDQAEARRIK 515
F+ + MEY + EKA K+ Q++A RIK
Sbjct: 80 FQKAKEAMEYARKSATEKAAEKIQDIQSQAARIK 113
>SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)
Length = 787
Score = 28.3 bits (60), Expect = 5.7
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 552 PPRRRNCCRPSLEKTKPRLPLRSK 623
PP +N +P ++KTKP PL ++
Sbjct: 199 PPSEKNAFQPPMKKTKPSSPLLTR 222
>SB_20414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -1
Query: 375 DACQSSWQFCTSGAIFLEPF-VFVPIVPSVAYAHW 274
D + S Q C FLEP VF P+ PS A+AH+
Sbjct: 192 DIVEKSQQACREHEAFLEPMGVFSPLPPS-AHAHF 225
>SB_39529| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 310
Score = 27.9 bits (59), Expect = 7.5
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = -2
Query: 569 VPPSWRQYVPRGACVPPLLYSAGLSLVAKHLRPGLLSLLP-VDVLHEHTLVLEHI 408
+PPSW+ A V PL +++V KH+RP +SL P + L E ++ H+
Sbjct: 95 LPPSWKD-----ADVTPLPKVKPVTIVTKHIRP--ISLTPALSKLAEDFVLRNHV 142
>SB_6214| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 666
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 205 RVRKNTEARRKGRHCGLVREEVL 273
R +K++ RRK HCG V EE++
Sbjct: 81 RKKKDSTTRRKVYHCGFVPEELI 103
>SB_51421| Best HMM Match : VWA (HMM E-Value=3.5e-27)
Length = 576
Score = 27.5 bits (58), Expect = 9.9
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +3
Query: 411 VFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRIK*RR-HASAARNVLPPRRRNCCRPSL 587
+ K KRV + I + T++L A RR+ R +S +R +R+ C RP
Sbjct: 348 MLKQKRVTI--ISVGVGNRVNTRVLRTMASNRRLVFRSGFSSLSRIASLVKRKICTRPGK 405
Query: 588 EKTKPRLP 611
+ KP+ P
Sbjct: 406 KPKKPKAP 413
>SB_51402| Best HMM Match : Peptidase_M13_N (HMM E-Value=1.9e-12)
Length = 1206
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 390 RVSGIDACQSSWQFCTSGAIFLEPFVF 310
RV+G+ S WQ CT+ A L+ VF
Sbjct: 493 RVAGVKKSPSRWQQCTNAANNLDGLVF 519
>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
Length = 878
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = +3
Query: 465 KARTKMLSDQAEARRIK*RRHASAARNVLPPRRRNCCRPSLEKTKPRLPLRSKH 626
K+R K S +E RRHAS++ PP+++ R +++ R P +S+H
Sbjct: 81 KSRKKRRSPSSEDEPAS-RRHASSSPEDSPPKKK---RKRRVESEERSPFKSRH 130
>SB_40626| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 979
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/74 (21%), Positives = 29/74 (39%)
Frame = +3
Query: 360 KIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRIK*RRHASAA 539
+ R Y +LY KGN F + L++ E+ R K + + R+ +
Sbjct: 70 EFQRKRYGNLYQLLKGNTFTDAEDLVKLWDAAHYEEERAKKRKPLTPLAKFRIRQRFTPP 129
Query: 540 RNVLPPRRRNCCRP 581
+ + P R+ P
Sbjct: 130 KTICPKGRQKSTLP 143
>SB_2130| Best HMM Match : fn2 (HMM E-Value=2.7e-15)
Length = 430
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +1
Query: 127 NSRQNIRKMIKDGLVIKK--PVAVHSRARVRKNTEARRKGRHCGLVRE 264
+S NIRK IKDG K P S +VRK + RR + V++
Sbjct: 95 SSNTNIRKRIKDGDASKSNVPQRTTSHDQVRKVSGQRRHSTYTSQVKK 142
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,692,750
Number of Sequences: 59808
Number of extensions: 450737
Number of successful extensions: 1352
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1349
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -