Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00521
         (563 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF506023-1|AAM46899.1|   76|Tribolium castaneum polyubiquitin pr...   140   1e-35
AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin pr...   140   1e-35
AF506021-1|AAM46897.1|   64|Tribolium castaneum polyubiquitin pr...   128   3e-32
AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin pr...   126   2e-31
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    25   0.59 
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    25   0.59 
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    24   1.0  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    24   1.0  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    24   1.0  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   2.4  

>AF506023-1|AAM46899.1|   76|Tribolium castaneum polyubiquitin
           protein.
          Length = 76

 Score =  140 bits (338), Expect = 1e-35
 Identities = 68/70 (97%), Positives = 69/70 (98%)
 Frame = +3

Query: 12  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL*DYN 191
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 192 IQKESTLHLV 221
           IQKESTLHLV
Sbjct: 61  IQKESTLHLV 70


>AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin
           protein.
          Length = 685

 Score =  140 bits (338), Expect = 1e-35
 Identities = 68/70 (97%), Positives = 69/70 (98%)
 Frame = +3

Query: 12  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL*DYN 191
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 192 IQKESTLHLV 221
           IQKESTLHLV
Sbjct: 61  IQKESTLHLV 70



 Score =  140 bits (338), Expect = 1e-35
 Identities = 68/70 (97%), Positives = 69/70 (98%)
 Frame = +3

Query: 12  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL*DYN 191
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL DYN
Sbjct: 77  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136

Query: 192 IQKESTLHLV 221
           IQKESTLHLV
Sbjct: 137 IQKESTLHLV 146



 Score =  140 bits (338), Expect = 1e-35
 Identities = 68/70 (97%), Positives = 69/70 (98%)
 Frame = +3

Query: 12  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL*DYN 191
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL DYN
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212

Query: 192 IQKESTLHLV 221
           IQKESTLHLV
Sbjct: 213 IQKESTLHLV 222



 Score =  140 bits (338), Expect = 1e-35
 Identities = 68/70 (97%), Positives = 69/70 (98%)
 Frame = +3

Query: 12  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL*DYN 191
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL DYN
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288

Query: 192 IQKESTLHLV 221
           IQKESTLHLV
Sbjct: 289 IQKESTLHLV 298



 Score =  140 bits (338), Expect = 1e-35
 Identities = 68/70 (97%), Positives = 69/70 (98%)
 Frame = +3

Query: 12  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL*DYN 191
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL DYN
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364

Query: 192 IQKESTLHLV 221
           IQKESTLHLV
Sbjct: 365 IQKESTLHLV 374



 Score =  140 bits (338), Expect = 1e-35
 Identities = 68/70 (97%), Positives = 69/70 (98%)
 Frame = +3

Query: 12  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL*DYN 191
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL DYN
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 516

Query: 192 IQKESTLHLV 221
           IQKESTLHLV
Sbjct: 517 IQKESTLHLV 526



 Score =  140 bits (338), Expect = 1e-35
 Identities = 68/70 (97%), Positives = 69/70 (98%)
 Frame = +3

Query: 12  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL*DYN 191
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL DYN
Sbjct: 533 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 592

Query: 192 IQKESTLHLV 221
           IQKESTLHLV
Sbjct: 593 IQKESTLHLV 602



 Score =  140 bits (338), Expect = 1e-35
 Identities = 68/70 (97%), Positives = 69/70 (98%)
 Frame = +3

Query: 12  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL*DYN 191
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL DYN
Sbjct: 609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 668

Query: 192 IQKESTLHLV 221
           IQKESTLHLV
Sbjct: 669 IQKESTLHLV 678



 Score =  137 bits (332), Expect = 5e-35
 Identities = 67/70 (95%), Positives = 68/70 (97%)
 Frame = +3

Query: 12  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL*DYN 191
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQR IFAGKQLEDGRTL DYN
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLSDYN 440

Query: 192 IQKESTLHLV 221
           IQKESTLHLV
Sbjct: 441 IQKESTLHLV 450


>AF506021-1|AAM46897.1|   64|Tribolium castaneum polyubiquitin
           protein.
          Length = 64

 Score =  128 bits (309), Expect = 3e-32
 Identities = 62/64 (96%), Positives = 63/64 (98%)
 Frame = +3

Query: 12  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL*DYN 191
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 192 IQKE 203
           IQKE
Sbjct: 61  IQKE 64


>AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin
           protein.
          Length = 112

 Score =  126 bits (303), Expect = 2e-31
 Identities = 61/64 (95%), Positives = 62/64 (96%)
 Frame = +3

Query: 12  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL*DYN 191
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQR IFAGKQLEDGRTL DYN
Sbjct: 49  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLSDYN 108

Query: 192 IQKE 203
           IQKE
Sbjct: 109 IQKE 112



 Score = 85.4 bits (202), Expect = 3e-19
 Identities = 40/42 (95%), Positives = 41/42 (97%)
 Frame = +3

Query: 96  KIQDKEGIPPNQQRLIFAGKQLEDGRTL*DYNIQKESTLHLV 221
           KIQDKEGIPP+QQRLIFAGKQLEDGRTL DYNIQKESTLHLV
Sbjct: 1   KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 42


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 24.6 bits (51), Expect = 0.59
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -2

Query: 517 SSRSVPYRLEGTYLFVVVFEDHRAVTLPAVVTVLHHR 407
           +S +VP  L GTY   ++F    +V L  VV   HHR
Sbjct: 267 TSDAVP--LIGTYFNCIMFMVASSVVLTVVVLNYHHR 301


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 24.6 bits (51), Expect = 0.59
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -2

Query: 517 SSRSVPYRLEGTYLFVVVFEDHRAVTLPAVVTVLHHR 407
           +S +VP  L GTY   ++F    +V L  VV   HHR
Sbjct: 267 TSDAVP--LIGTYFNCIMFMVASSVVLTVVVLNYHHR 301


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 493 LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 407
           L GTY   ++F    +V L  VV   HHR
Sbjct: 273 LLGTYFNCIMFMVASSVVLTVVVLNYHHR 301


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 493 LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 407
           L GTY   ++F    +V L  VV   HHR
Sbjct: 273 LLGTYFNCIMFMVASSVVLTVVVLNYHHR 301


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 493 LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 407
           L GTY   ++F    +V L  VV   HHR
Sbjct: 273 LLGTYFNCIMFMVASSVVLTVVVLNYHHR 301


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = -3

Query: 237 HHEASTPGGGWIPSGYCSPR 178
           HH    P GG  P G   PR
Sbjct: 63  HHYGGPPSGGQPPQGMPYPR 82


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,534
Number of Sequences: 336
Number of extensions: 2469
Number of successful extensions: 19
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13890653
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)