Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00521
         (563 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|...   134   8e-33
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz...   134   8e-33
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi...   134   8e-33
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M...   134   8e-33
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch...   134   8e-33
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro...    84   1e-17
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc...    42   8e-05
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb...    40   3e-04
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc...    39   6e-04
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    28   1.1  
SPBC31E1.03 |hub1|ubl4|ubiquitin-like protein modifier Hub1|Schi...    28   1.1  
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom...    27   2.5  
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc...    26   4.4  
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   7.7  

>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
           Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 128

 Score =  134 bits (324), Expect = 8e-33
 Identities = 65/70 (92%), Positives = 68/70 (97%)
 Frame = +3

Query: 12  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL*DYN 191
           MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTL DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 192 IQKESTLHLV 221
           IQKESTLHLV
Sbjct: 61  IQKESTLHLV 70


>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
           Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 128

 Score =  134 bits (324), Expect = 8e-33
 Identities = 65/70 (92%), Positives = 68/70 (97%)
 Frame = +3

Query: 12  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL*DYN 191
           MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTL DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 192 IQKESTLHLV 221
           IQKESTLHLV
Sbjct: 61  IQKESTLHLV 70


>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
           Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score =  134 bits (324), Expect = 8e-33
 Identities = 65/70 (92%), Positives = 68/70 (97%)
 Frame = +3

Query: 12  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL*DYN 191
           MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTL DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 192 IQKESTLHLV 221
           IQKESTLHLV
Sbjct: 61  IQKESTLHLV 70



 Score = 65.3 bits (152), Expect = 6e-12
 Identities = 30/68 (44%), Positives = 42/68 (61%)
 Frame = +2

Query: 251 QEKNYSTPXXXXXXXXXXXLAVLRFYKVDENGKIHRLXRECTGDXYGAGVFMAVMEDRHY 430
           ++K Y+TP           LAVL++YKV+++G + RL REC     GA  FMA  +DR Y
Sbjct: 81  KKKTYTTPKKIKHKHKKVELAVLKYYKVEDDGSVKRLRRECPN--CGASTFMANHKDRLY 138

Query: 431 CGKCHSTM 454
           CG+CH T+
Sbjct: 139 CGRCHLTL 146


>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 382

 Score =  134 bits (324), Expect = 8e-33
 Identities = 65/70 (92%), Positives = 68/70 (97%)
 Frame = +3

Query: 12  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL*DYN 191
           MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTL DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 192 IQKESTLHLV 221
           IQKESTLHLV
Sbjct: 61  IQKESTLHLV 70



 Score =  134 bits (324), Expect = 8e-33
 Identities = 65/70 (92%), Positives = 68/70 (97%)
 Frame = +3

Query: 12  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL*DYN 191
           MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTL DYN
Sbjct: 77  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136

Query: 192 IQKESTLHLV 221
           IQKESTLHLV
Sbjct: 137 IQKESTLHLV 146



 Score =  134 bits (324), Expect = 8e-33
 Identities = 65/70 (92%), Positives = 68/70 (97%)
 Frame = +3

Query: 12  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL*DYN 191
           MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTL DYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212

Query: 192 IQKESTLHLV 221
           IQKESTLHLV
Sbjct: 213 IQKESTLHLV 222



 Score =  134 bits (324), Expect = 8e-33
 Identities = 65/70 (92%), Positives = 68/70 (97%)
 Frame = +3

Query: 12  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL*DYN 191
           MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTL DYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288

Query: 192 IQKESTLHLV 221
           IQKESTLHLV
Sbjct: 289 IQKESTLHLV 298



 Score =  134 bits (324), Expect = 8e-33
 Identities = 65/70 (92%), Positives = 68/70 (97%)
 Frame = +3

Query: 12  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL*DYN 191
           MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTL DYN
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364

Query: 192 IQKESTLHLV 221
           IQKESTLHLV
Sbjct: 365 IQKESTLHLV 374


>SPAC589.10c |||ribomal-ubiquitin fusion protein
           Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score =  134 bits (324), Expect = 8e-33
 Identities = 65/70 (92%), Positives = 68/70 (97%)
 Frame = +3

Query: 12  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL*DYN 191
           MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTL DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 192 IQKESTLHLV 221
           IQKESTLHLV
Sbjct: 61  IQKESTLHLV 70



 Score = 65.3 bits (152), Expect = 6e-12
 Identities = 30/68 (44%), Positives = 42/68 (61%)
 Frame = +2

Query: 251 QEKNYSTPXXXXXXXXXXXLAVLRFYKVDENGKIHRLXRECTGDXYGAGVFMAVMEDRHY 430
           ++K Y+TP           LAVL++YKV+++G + RL REC     GA  FMA  +DR Y
Sbjct: 81  KKKTYTTPKKIKHKHKKVELAVLKYYKVEDDGSVKRLRRECPN--CGASTFMANHKDRLY 138

Query: 431 CGKCHSTM 454
           CG+CH T+
Sbjct: 139 CGRCHLTL 146


>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
           protein modifier Ned8|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 78

 Score = 84.2 bits (199), Expect = 1e-17
 Identities = 36/70 (51%), Positives = 53/70 (75%)
 Frame = +3

Query: 12  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL*DYN 191
           M I VKTLTGK I L+++P+D +  +K ++++KEGIPP+QQRLI+AGKQ+ D +    Y+
Sbjct: 1   MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60

Query: 192 IQKESTLHLV 221
           ++  S LHLV
Sbjct: 61  LEGGSVLHLV 70


>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
           Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 41.5 bits (93), Expect = 8e-05
 Identities = 20/58 (34%), Positives = 33/58 (56%)
 Frame = +3

Query: 39  GKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL*DYNIQKESTL 212
           GK   LE+EP++T   +K ++     +PP +Q++I  G QL+D   L    I+  +TL
Sbjct: 10  GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67


>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 368

 Score = 39.5 bits (88), Expect = 3e-04
 Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
 Frame = +3

Query: 12  MQIFVKTLTGKTITLEVEPSDT-IENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL*DY 188
           M +  K L  +   +    +DT I  +K KIQ ++     +Q+LI++G+ L D +T+ +Y
Sbjct: 1   MNLTFKNLQQQKFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEY 60

Query: 189 NIQKE 203
           NI+++
Sbjct: 61  NIKEQ 65


>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 38.7 bits (86), Expect = 6e-04
 Identities = 20/70 (28%), Positives = 36/70 (51%)
 Frame = +3

Query: 12  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL*DYN 191
           + + +K    +   + V+   ++  +K  I     I   +QRLI+AG+ L+D  +L  Y 
Sbjct: 4   ISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYK 63

Query: 192 IQKESTLHLV 221
           IQ   ++HLV
Sbjct: 64  IQDGHSIHLV 73


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 445 VTLPAVVTVLHHRHEHSGAVLIAC 374
           VTL A+ T+L + H H   +L+AC
Sbjct: 402 VTLKAIETLLENTHSHVLPILVAC 425


>SPBC31E1.03 |hub1|ubl4|ubiquitin-like protein modifier
           Hub1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 73

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 16/69 (23%), Positives = 30/69 (43%)
 Frame = +3

Query: 12  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL*DYN 191
           +++      GK + ++  P DT+ + K  +  + G  P +  L       +D  TL DY 
Sbjct: 2   IEVLCNDRLGKKVRVKCMPDDTVGDFKKLVAAQTGTDPRRIVLKKWHSVFKDNITLADYE 61

Query: 192 IQKESTLHL 218
           I    +L +
Sbjct: 62  IHDGMSLEM 70


>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
           Msp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 903

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 201 PSGYCSPRGYVHLPAAFQQRSTSVDWEGF 115
           PS +  PRG V+ P+  ++R + +   GF
Sbjct: 17  PSSFLKPRGLVYRPSQIRRRVSLLSLSGF 45


>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +2

Query: 314 VLRFY-KVDENGKIHRLXRECTGDXYGAGVFMAVMEDRHYCGKCHSTMVFKDDD 472
           V+R Y ++ +N +     R C  +      F  V++D H   KC + ++    D
Sbjct: 224 VIRCYLRLSDNPRAREALRHCLPEPLRDATFAQVLKDDHNTKKCLAQLLINLSD 277


>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 475

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 238 ALRNAREELLHTQEDQAQEEEGQTSRPQVLQGRRER 345
           A  N  +E  HT  D+++ E+ Q S   V   R+E+
Sbjct: 52  AEENLNDEANHTSSDKSKSEDYQPSNVNVWALRKEK 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,185,525
Number of Sequences: 5004
Number of extensions: 42699
Number of successful extensions: 110
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)