Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00521
(563 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.) 140 9e-34
SB_57838| Best HMM Match : No HMM Matches (HMM E-Value=.) 140 9e-34
SB_46051| Best HMM Match : ubiquitin (HMM E-Value=0) 140 9e-34
SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0) 140 9e-34
SB_28758| Best HMM Match : ubiquitin (HMM E-Value=1.5e-29) 126 1e-29
SB_20850| Best HMM Match : ubiquitin (HMM E-Value=0.00037) 71 7e-13
SB_41074| Best HMM Match : ubiquitin (HMM E-Value=2.3e-10) 49 2e-06
SB_59029| Best HMM Match : Pkinase (HMM E-Value=0) 45 4e-05
SB_49791| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_1967| Best HMM Match : ubiquitin (HMM E-Value=4.7e-12) 36 0.023
SB_25220| Best HMM Match : Ank (HMM E-Value=6.2e-11) 35 0.040
SB_56543| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.070
SB_10325| Best HMM Match : ubiquitin (HMM E-Value=3.4e-05) 34 0.092
SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18) 31 0.86
SB_22742| Best HMM Match : ubiquitin (HMM E-Value=0.01) 30 1.1
SB_42868| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_54258| Best HMM Match : ubiquitin (HMM E-Value=0.00055) 30 1.5
SB_5154| Best HMM Match : zf-C2H2 (HMM E-Value=1.8) 29 2.0
SB_38456| Best HMM Match : BTB (HMM E-Value=8.8e-26) 29 3.5
SB_36411| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_35539| Best HMM Match : RVT_1 (HMM E-Value=1.7e-07) 28 6.1
SB_40252| Best HMM Match : LRR_1 (HMM E-Value=8.2e-12) 27 8.0
>SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 140 bits (338), Expect = 9e-34
Identities = 68/70 (97%), Positives = 69/70 (98%)
Frame = +3
Query: 12 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL*DYN 191
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL DYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 192 IQKESTLHLV 221
IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70
Score = 83.8 bits (198), Expect = 9e-17
Identities = 40/70 (57%), Positives = 46/70 (65%)
Frame = +2
Query: 251 QEKNYSTPXXXXXXXXXXXLAVLRFYKVDENGKIHRLXRECTGDXYGAGVFMAVMEDRHY 430
++KNY+TP LAVL++YKVDENGKI RL REC + GAGVFMA DR Y
Sbjct: 81 KKKNYTTPKKIKHKKKKVKLAVLKYYKVDENGKITRLRRECPSESCGAGVFMASHFDRQY 140
Query: 431 CGKCHSTMVF 460
CGKC T VF
Sbjct: 141 CGKCCLTYVF 150
>SB_57838| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 533
Score = 140 bits (338), Expect = 9e-34
Identities = 68/70 (97%), Positives = 69/70 (98%)
Frame = +3
Query: 12 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL*DYN 191
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL DYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 192 IQKESTLHLV 221
IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70
Score = 140 bits (338), Expect = 9e-34
Identities = 68/70 (97%), Positives = 69/70 (98%)
Frame = +3
Query: 12 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL*DYN 191
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL DYN
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 192 IQKESTLHLV 221
IQKESTLHLV
Sbjct: 137 IQKESTLHLV 146
Score = 140 bits (338), Expect = 9e-34
Identities = 68/70 (97%), Positives = 69/70 (98%)
Frame = +3
Query: 12 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL*DYN 191
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL DYN
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 192 IQKESTLHLV 221
IQKESTLHLV
Sbjct: 213 IQKESTLHLV 222
Score = 140 bits (338), Expect = 9e-34
Identities = 68/70 (97%), Positives = 69/70 (98%)
Frame = +3
Query: 12 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL*DYN 191
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL DYN
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 192 IQKESTLHLV 221
IQKESTLHLV
Sbjct: 289 IQKESTLHLV 298
Score = 140 bits (338), Expect = 9e-34
Identities = 68/70 (97%), Positives = 69/70 (98%)
Frame = +3
Query: 12 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL*DYN 191
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL DYN
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 192 IQKESTLHLV 221
IQKESTLHLV
Sbjct: 365 IQKESTLHLV 374
Score = 140 bits (338), Expect = 9e-34
Identities = 68/70 (97%), Positives = 69/70 (98%)
Frame = +3
Query: 12 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL*DYN 191
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL DYN
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 440
Query: 192 IQKESTLHLV 221
IQKESTLHLV
Sbjct: 441 IQKESTLHLV 450
Score = 140 bits (338), Expect = 9e-34
Identities = 68/70 (97%), Positives = 69/70 (98%)
Frame = +3
Query: 12 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL*DYN 191
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL DYN
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 516
Query: 192 IQKESTLHLV 221
IQKESTLHLV
Sbjct: 517 IQKESTLHLV 526
>SB_46051| Best HMM Match : ubiquitin (HMM E-Value=0)
Length = 381
Score = 140 bits (338), Expect = 9e-34
Identities = 68/70 (97%), Positives = 69/70 (98%)
Frame = +3
Query: 12 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL*DYN 191
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL DYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 192 IQKESTLHLV 221
IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70
Score = 140 bits (338), Expect = 9e-34
Identities = 68/70 (97%), Positives = 69/70 (98%)
Frame = +3
Query: 12 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL*DYN 191
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL DYN
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 192 IQKESTLHLV 221
IQKESTLHLV
Sbjct: 137 IQKESTLHLV 146
Score = 140 bits (338), Expect = 9e-34
Identities = 68/70 (97%), Positives = 69/70 (98%)
Frame = +3
Query: 12 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL*DYN 191
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL DYN
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 192 IQKESTLHLV 221
IQKESTLHLV
Sbjct: 213 IQKESTLHLV 222
Score = 140 bits (338), Expect = 9e-34
Identities = 68/70 (97%), Positives = 69/70 (98%)
Frame = +3
Query: 12 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL*DYN 191
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL DYN
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 192 IQKESTLHLV 221
IQKESTLHLV
Sbjct: 289 IQKESTLHLV 298
Score = 140 bits (338), Expect = 9e-34
Identities = 68/70 (97%), Positives = 69/70 (98%)
Frame = +3
Query: 12 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL*DYN 191
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL DYN
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 192 IQKESTLHLV 221
IQKESTLHLV
Sbjct: 365 IQKESTLHLV 374
>SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0)
Length = 147
Score = 140 bits (338), Expect = 9e-34
Identities = 68/70 (97%), Positives = 69/70 (98%)
Frame = +3
Query: 12 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL*DYN 191
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL DYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 192 IQKESTLHLV 221
IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70
Score = 79.0 bits (186), Expect = 2e-15
Identities = 40/69 (57%), Positives = 52/69 (75%)
Frame = +3
Query: 12 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL*DYN 191
MQI VK KT TL+VE SDT+E+VK KIQ++EGIPP QRL++ ++L D R+L DYN
Sbjct: 77 MQISVKA-HWKTFTLDVEASDTVESVKEKIQNREGIPPKVQRLLYEEEELVDNRSLADYN 135
Query: 192 IQKESTLHL 218
I++ S LHL
Sbjct: 136 IKQGSILHL 144
>SB_28758| Best HMM Match : ubiquitin (HMM E-Value=1.5e-29)
Length = 142
Score = 126 bits (304), Expect = 1e-29
Identities = 61/63 (96%), Positives = 62/63 (98%)
Frame = +3
Query: 12 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL*DYN 191
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL DYN
Sbjct: 79 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 138
Query: 192 IQK 200
IQK
Sbjct: 139 IQK 141
>SB_20850| Best HMM Match : ubiquitin (HMM E-Value=0.00037)
Length = 150
Score = 70.9 bits (166), Expect = 7e-13
Identities = 33/35 (94%), Positives = 34/35 (97%)
Frame = +3
Query: 117 IPPNQQRLIFAGKQLEDGRTL*DYNIQKESTLHLV 221
IPP+QQRLIFAGKQLEDGRTL DYNIQKESTLHLV
Sbjct: 2 IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 36
>SB_41074| Best HMM Match : ubiquitin (HMM E-Value=2.3e-10)
Length = 333
Score = 49.2 bits (112), Expect = 2e-06
Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Frame = +3
Query: 18 IFVKTLTGKTITLEVE-PSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL*DYNI 194
I V TLTG+ I + + P TI VK I+ K G P +QQRL+F G+ L D T I
Sbjct: 73 IAVLTLTGERILIPFKSPKHTIIEVKYLIEAKGGYPKDQQRLVFNGQVLSDEDTFEKVGI 132
Query: 195 QKESTLHLV 221
+TLHL+
Sbjct: 133 FAGATLHLI 141
>SB_59029| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 1023
Score = 45.2 bits (102), Expect = 4e-05
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Frame = +3
Query: 6 VKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQ---DKEGIPPNQQRLIFAGKQLEDGRT 176
V M I KTL +T +E+ +T+ +K KI+ K+ P +LI+AGK L D
Sbjct: 65 VNMIITFKTLQQQTFKVEIGEDETVLKLKQKIEADKGKDAYPHGNIKLIYAGKILNDDNP 124
Query: 177 L*DYNIQKES 206
L +YNI ++S
Sbjct: 125 LKEYNIDEKS 134
>SB_49791| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 35
Score = 37.5 bits (83), Expect = 0.007
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = +3
Query: 12 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE 113
M ++++TLTG L V P +TI +VKAKIQ E
Sbjct: 1 MDLYIQTLTGTAFELRVSPFETIMSVKAKIQRLE 34
>SB_1967| Best HMM Match : ubiquitin (HMM E-Value=4.7e-12)
Length = 348
Score = 35.9 bits (79), Expect = 0.023
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +3
Query: 12 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLED-GRTL*DY 188
M++ V G TL+V +EN +A ++ + G+P ++ L G QL D +TL Y
Sbjct: 1 MKVTVTGEDGSIFTLDVSVDLEVENFRALLEFESGVPASEISLYHDGVQLSDLKKTLTAY 60
Query: 189 NIQKESTLHLV 221
++++ + +V
Sbjct: 61 SVKENDVILMV 71
>SB_25220| Best HMM Match : Ank (HMM E-Value=6.2e-11)
Length = 744
Score = 35.1 bits (77), Expect = 0.040
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +3
Query: 15 QIFVKTLTGKTITLEVEPSDT-IENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL*DYN 191
Q+F T TL +D + +K++I+ K GIP + QRL F K+L D TL N
Sbjct: 7 QVFAALPTEDVCTLRDLTTDMHVFQLKSRIELKTGIPGDIQRLHFMNKELYDDATLAKVN 66
Query: 192 IQK 200
+++
Sbjct: 67 LKQ 69
>SB_56543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1076
Score = 34.3 bits (75), Expect = 0.070
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +3
Query: 3 RVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL 179
R+++ + +G L++ + TIE ++ ++ DK G PP QR I K + +L
Sbjct: 33 RLRVVVEDSETSGGAFNLQIPLNTTIEKLQNEVADKYGFPPKVQRWIIGKKMAKPNESL 91
>SB_10325| Best HMM Match : ubiquitin (HMM E-Value=3.4e-05)
Length = 198
Score = 33.9 bits (74), Expect = 0.092
Identities = 23/60 (38%), Positives = 32/60 (53%)
Frame = +3
Query: 12 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL*DYN 191
MQ+ VKTL +T T V +EGIP +QRLIF GK L+D + L +++
Sbjct: 1 MQVTVKTLDSETRTFTVS--------------EEGIPAERQRLIFKGKVLQDEKKLKEFD 46
>SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)
Length = 796
Score = 30.7 bits (66), Expect = 0.86
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +3
Query: 114 GIPPNQQRLIFAGKQLEDGRTL*DYN 191
GIP +QRLIF GK L+D + L +++
Sbjct: 1 GIPAERQRLIFKGKVLQDEKKLKEFD 26
>SB_22742| Best HMM Match : ubiquitin (HMM E-Value=0.01)
Length = 792
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = +3
Query: 18 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL 179
+ ++T G T+ +E+ ++E++KA+ + + GIP RL LED +
Sbjct: 185 MLLQTRGGSTLEIEITERTSVEDLKAEAELRVGIPVELIRLQVNKVNLEDSEKI 238
>SB_42868| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1353
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +3
Query: 75 TIENVKAKIQDKEGIPPNQQRLIFA-GKQLEDGRTL*DYNIQKESTLHL 218
T+ ++K + +K G+ + RL+ GK++ D L DYNI T+ L
Sbjct: 86 TVGDLKTMVTNKTGLHVSVFRLVIPEGKEMFDCNLLKDYNISTGDTIRL 134
>SB_54258| Best HMM Match : ubiquitin (HMM E-Value=0.00055)
Length = 411
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = +3
Query: 21 FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL*DYNIQK 200
FV G+ ITL P + ++ + G P ++ K LED T+ D + Q
Sbjct: 169 FVVMPEGQVITLHCNPRQSFSELRNHFSSEFGQPAEAILMLHEDKILEDQGTIADLSHQP 228
Query: 201 ESTLHL 218
+TL +
Sbjct: 229 GATLQI 234
>SB_5154| Best HMM Match : zf-C2H2 (HMM E-Value=1.8)
Length = 180
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +2
Query: 65 AVRYHRECES*NSRQRGNPSQSTEVDLCWKAAGRWTYPLGLQY 193
+ Y +E E + RQR +S E D+C K R+T Y
Sbjct: 39 STEYTQESEGLDERQRARGKKSFECDICGKCFSRFTITTKYNY 81
>SB_38456| Best HMM Match : BTB (HMM E-Value=8.8e-26)
Length = 1410
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Frame = +1
Query: 412 DGGPSLLREVSQ---HDGLQRRRQINKSPLACKERCDC 516
D PS L E+S G QR N + L+C E C C
Sbjct: 1343 DPAPSSLLELSTCGCKSGCQRNCSFNNNGLSCSEACSC 1380
>SB_36411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 654
Score = 28.3 bits (60), Expect = 4.6
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -2
Query: 433 AVVTVLHHRHEHSGAV 386
A++TV+HHRH H A+
Sbjct: 525 AIITVIHHRHHHHPAL 540
>SB_35539| Best HMM Match : RVT_1 (HMM E-Value=1.7e-07)
Length = 1105
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +2
Query: 107 QRGNPSQSTEVDLCWKAAGRWTYPLGLQYPEGIHPPPGVEAS 232
QRG S+ T + W+ +G + L IHPP V S
Sbjct: 299 QRGVSSRKTMISKAWQVSGVYHITLDANVTPVIHPPRRVAIS 340
>SB_40252| Best HMM Match : LRR_1 (HMM E-Value=8.2e-12)
Length = 481
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/44 (31%), Positives = 28/44 (63%)
Frame = +3
Query: 33 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLE 164
L G +IT+ +E D +EN++ +K+ +PP ++L+F + L+
Sbjct: 102 LGGNSITV-IEGLDKLENLRELHMEKQHLPPG-EKLLFDPRTLQ 143
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,031,714
Number of Sequences: 59808
Number of extensions: 356140
Number of successful extensions: 977
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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