Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00521
(563 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.53
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.53
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.53
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.2
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.2
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.2
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 2.8
Y13429-1|CAA73841.1| 402|Apis mellifera dopamine receptor, D1 p... 22 3.7
AY823258-1|AAX18443.1| 145|Apis mellifera pburs protein. 22 3.7
AM420632-1|CAM06632.1| 145|Apis mellifera bursicon subunit beta... 22 3.7
AY343324-1|AAQ21381.1| 156|Apis mellifera vacuolar H+ ATP synth... 22 4.9
U66709-1|AAB07515.1| 182|Apis mellifera ankyrin protein. 21 6.5
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 6.5
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 21 8.6
AF393494-1|AAL60419.1| 144|Apis mellifera odorant binding prote... 21 8.6
AF166496-1|AAD51944.1| 144|Apis mellifera pheromone-binding pro... 21 8.6
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 25.0 bits (52), Expect = 0.53
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -2
Query: 532 KSIIHSSRSVPYRLEGTYLFVVVFEDHRAVTLPAVVTVLHHR 407
+S+ +S +VP L G+Y ++F +V L +V + HHR
Sbjct: 245 ESMPTTSDAVP--LIGSYFNCIMFMVASSVVLTVLVLIFHHR 284
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 25.0 bits (52), Expect = 0.53
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -2
Query: 532 KSIIHSSRSVPYRLEGTYLFVVVFEDHRAVTLPAVVTVLHHR 407
+S+ +S +VP L G+Y ++F +V L +V + HHR
Sbjct: 245 ESMPTTSDAVP--LIGSYFNCIMFMVASSVVLTVLVLIFHHR 284
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 25.0 bits (52), Expect = 0.53
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -2
Query: 532 KSIIHSSRSVPYRLEGTYLFVVVFEDHRAVTLPAVVTVLHHR 407
+S+ +S +VP L G+Y ++F +V L +V + HHR
Sbjct: 245 ESMPTTSDAVP--LIGSYFNCIMFMVASSVVLTVLVLIFHHR 284
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.2
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -2
Query: 493 LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 407
L G+Y ++F +V L +V + HHR
Sbjct: 256 LLGSYFNCIMFMVASSVVLTVLVLIFHHR 284
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.2
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -2
Query: 493 LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 407
L G+Y ++F +V L +V + HHR
Sbjct: 256 LLGSYFNCIMFMVASSVVLTVLVLIFHHR 284
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.2
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -2
Query: 493 LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 407
L G+Y ++F +V L +V + HHR
Sbjct: 256 LLGSYFNCIMFMVASSVVLTVLVLIFHHR 284
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 2.8
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -2
Query: 532 KSIIHSSRSVPYRLEGTYLFVVVFEDHRAVTLPAVVTVLHHR 407
+S+ +S +VP L G+Y ++F +V L +V HHR
Sbjct: 313 ESMPTTSDAVP--LIGSYFNCIMFMVASSVVLTVLVLNFHHR 352
>Y13429-1|CAA73841.1| 402|Apis mellifera dopamine receptor, D1
protein.
Length = 402
Score = 22.2 bits (45), Expect = 3.7
Identities = 7/27 (25%), Positives = 17/27 (62%)
Frame = -3
Query: 315 TASLTFFFLCLIFLGVE*FFSCVS*RH 235
++S++F+ C++ LG+ C + +H
Sbjct: 196 SSSISFYVPCIVMLGIYCRLYCYAQKH 222
>AY823258-1|AAX18443.1| 145|Apis mellifera pburs protein.
Length = 145
Score = 22.2 bits (45), Expect = 3.7
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 335 DENGKIHRLXRECTGD 382
DE +I RL R C+GD
Sbjct: 48 DEYDEIGRLKRTCSGD 63
>AM420632-1|CAM06632.1| 145|Apis mellifera bursicon subunit beta
protein precursor protein.
Length = 145
Score = 22.2 bits (45), Expect = 3.7
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 335 DENGKIHRLXRECTGD 382
DE +I RL R C+GD
Sbjct: 48 DEYDEIGRLKRTCSGD 63
>AY343324-1|AAQ21381.1| 156|Apis mellifera vacuolar H+ ATP synthase
16 kDa proteolipidsubunit protein.
Length = 156
Score = 21.8 bits (44), Expect = 4.9
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -3
Query: 216 GGGWIPSGYCSPRGYVHLPA 157
GG P GY +G+VHL A
Sbjct: 77 GGLEEPKGYTLFKGFVHLGA 96
>U66709-1|AAB07515.1| 182|Apis mellifera ankyrin protein.
Length = 182
Score = 21.4 bits (43), Expect = 6.5
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 504 TLRLLCMMDFK*NLDTV 554
TLR+LCM D K + T+
Sbjct: 162 TLRVLCMTDGKEGMHTL 178
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 6.5
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -2
Query: 493 LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 407
L G+Y ++F +V L +V HHR
Sbjct: 324 LLGSYFNCIMFMVASSVVLTVLVLNFHHR 352
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 21.0 bits (42), Expect = 8.6
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -2
Query: 541 FYLKSIIHSSRSVPYRLEGTYLFVVVFEDHRAVTLPAVVTVLHHR 407
F L S I S S+ L G YL + +V + V+ +H+R
Sbjct: 281 FLLISEIIPSTSLALPLLGKYLLFTMILVGLSVVITIVILNVHYR 325
>AF393494-1|AAL60419.1| 144|Apis mellifera odorant binding protein
ASP1 protein.
Length = 144
Score = 21.0 bits (42), Expect = 8.6
Identities = 12/41 (29%), Positives = 16/41 (39%)
Frame = +2
Query: 350 IHRLXRECTGDXYGAGVFMAVMEDRHYCGKCHSTMVFKDDD 472
+H + D VF V ED+ C H T + DD
Sbjct: 18 LHAIFVNAAPDWVPPEVFDLVAEDKARCMSEHGTTQAQIDD 58
>AF166496-1|AAD51944.1| 144|Apis mellifera pheromone-binding
protein ASP1 protein.
Length = 144
Score = 21.0 bits (42), Expect = 8.6
Identities = 12/41 (29%), Positives = 16/41 (39%)
Frame = +2
Query: 350 IHRLXRECTGDXYGAGVFMAVMEDRHYCGKCHSTMVFKDDD 472
+H + D VF V ED+ C H T + DD
Sbjct: 18 LHAIFVNAAPDWVPPEVFDLVAEDKARCMSEHGTTQAQIDD 58
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,979
Number of Sequences: 438
Number of extensions: 3014
Number of successful extensions: 20
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -