Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00519
(491 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac... 104 6e-24
SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch... 103 1e-23
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces... 26 2.7
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 26 3.5
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||... 25 4.7
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 25 4.7
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 25 8.2
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 25 8.2
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 25 8.2
>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
S19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 144
Score = 104 bits (250), Expect = 6e-24
Identities = 45/84 (53%), Positives = 59/84 (70%)
Frame = +2
Query: 2 KDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYI 181
KDV+ K + AA LK++GK+ P+ +D+VKT KELAPYDPDW+YVR AAI RHIY+
Sbjct: 7 KDVDAQKFITAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAIARHIYL 66
Query: 182 RSPVGVKTVTKIFGGRKRNGVTPS 253
R VGV + K++GG G+ PS
Sbjct: 67 RKQVGVGRLCKVYGGSVNRGMRPS 90
Score = 49.6 bits (113), Expect = 3e-07
Identities = 22/39 (56%), Positives = 31/39 (79%)
Frame = +1
Query: 268 SGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 384
SGS+ RK +QSLE + ++EK +GGR ++ QG+RDLDRI
Sbjct: 96 SGSVQRKVVQSLEKIGVLEKSDNGGRRISQQGQRDLDRI 134
>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
S19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 103 bits (247), Expect = 1e-23
Identities = 44/84 (52%), Positives = 59/84 (70%)
Frame = +2
Query: 2 KDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYI 181
KDV+ + + AA LK++GK+ P+ +D+VKT KELAPYDPDW+YVR AAI RHIY+
Sbjct: 7 KDVDAQQFINAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAIARHIYL 66
Query: 182 RSPVGVKTVTKIFGGRKRNGVTPS 253
R VGV + K++GG G+ PS
Sbjct: 67 RKQVGVGRLCKVYGGSVNRGMRPS 90
Score = 49.6 bits (113), Expect = 3e-07
Identities = 22/39 (56%), Positives = 31/39 (79%)
Frame = +1
Query: 268 SGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 384
SGS+ RK +QSLE + ++EK +GGR ++ QG+RDLDRI
Sbjct: 96 SGSVQRKVVQSLEKIGVLEKSDNGGRRISQQGQRDLDRI 134
>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 26.2 bits (55), Expect = 2.7
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +3
Query: 117 WLRMTLIGSMCVVLPSFVIFTFAHLLESRLSPRSLVGANVMELHLHFLQVIRQYC-TQGF 293
WL + LIG MC S V FT ++ L+ ++ VG N L L ++ Q +
Sbjct: 180 WLYLILIGRMC----SGVGFTMFLYHKTYLTDKNFVGQN-RSTFLATLNILAQILGSMAG 234
Query: 294 AIVGGIEA 317
A +GGI A
Sbjct: 235 AFLGGILA 242
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 25.8 bits (54), Expect = 3.5
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -2
Query: 223 TKDLGDSLDSNR*ANVNMTKDGSTTHIEPIRVIRSQL 113
++D+G +L+ N+ +N+ TK+ S I+ QL
Sbjct: 109 SQDVGQNLEDNQISNIGTTKEASNAPIKTTNFAGVQL 145
>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
1|||Manual
Length = 459
Score = 25.4 bits (53), Expect = 4.7
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +3
Query: 108 SKSWLRMT-LIGSMCVVLPSFVIFTFAHLLESRLSPRSLVGANVMELHLHFLQV 266
++SW R L+ +C++L +++ F + SR + ANV +++ FL +
Sbjct: 321 AESWKRFQRLLFPLCILLVLYLVSNFLSVGVSRRLANTPYVANVAFINMFFLTI 374
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 25.4 bits (53), Expect = 4.7
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +3
Query: 99 QLASKSWLRMTLIGSMCVVL 158
+L SKSWL + +G +C+ L
Sbjct: 359 KLLSKSWLSLEPVGQICISL 378
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 24.6 bits (51), Expect = 8.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 147 CVVLPSFVIFTFAHLLESRL 206
C+V S V+F AH+ E RL
Sbjct: 176 CIVSSSLVLFDNAHVTEGRL 195
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 24.6 bits (51), Expect = 8.2
Identities = 7/19 (36%), Positives = 14/19 (73%)
Frame = +1
Query: 169 SYLHSLTCWSQDCHQDLWW 225
S+ + +T + Q CH++LW+
Sbjct: 1149 SFQNLVTVFCQSCHKELWY 1167
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 24.6 bits (51), Expect = 8.2
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Frame = -3
Query: 372 VSSTLCGENATT----VLNFLNKLQCLQRLQSLAC 280
VSS C E T L+ +N ++C+ LQS+ C
Sbjct: 261 VSSKNCFEEPITPRFQALHRINMIECIPELQSVVC 295
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,748,169
Number of Sequences: 5004
Number of extensions: 33313
Number of successful extensions: 95
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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