Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00519
         (491 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0129 + 17520753-17520842,17521651-17521741,17521887-175220...   111   3e-25
06_03_0203 - 17863130-17863940,17864023-17864341,17864653-178647...    28   4.7  
07_03_0493 + 18747427-18748356,18748594-18748697,18749586-187497...    27   6.2  
03_02_0901 + 12267042-12267182,12267949-12268095,12268163-122682...    27   6.2  
11_06_0675 + 26139284-26139745,26139932-26139980,26140118-261402...    27   8.2  
11_02_0051 + 7776312-7780228,7780627-7780695,7781920-7781979,778...    27   8.2  

>03_04_0129 +
           17520753-17520842,17521651-17521741,17521887-17522070,
           17522149-17522224
          Length = 146

 Score =  111 bits (267), Expect = 3e-25
 Identities = 48/83 (57%), Positives = 63/83 (75%)
 Frame = +2

Query: 2   KDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYI 181
           KDV   + VK  +AHLK++GK+++PE +D+VKTARFKEL PYDPDW+Y R A+I R IY+
Sbjct: 10  KDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASIARKIYL 69

Query: 182 RSPVGVKTVTKIFGGRKRNGVTP 250
           R  +GV    KI+GGR+RNG  P
Sbjct: 70  RQGIGVGGFQKIYGGRQRNGSRP 92



 Score = 53.6 bits (123), Expect = 8e-08
 Identities = 21/43 (48%), Positives = 34/43 (79%)
 Frame = +1

Query: 256 FCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 384
           FC+SSG+I+R  LQ L+ + +++    GGR++T+QGRRDLD++
Sbjct: 95  FCKSSGAISRNILQQLQKMGIIDVDPKGGRLITSQGRRDLDQV 137


>06_03_0203 -
           17863130-17863940,17864023-17864341,17864653-17864716,
           17864811-17864929,17865515-17865640,17866626-17866632,
           17867421-17867562,17867720-17867738,17868082-17868292
          Length = 605

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 334 PELSQQASMPPTIAKPCVQYCLMTCRK*R 248
           P+L ++  +  T   P V++C MTCRK R
Sbjct: 379 PKLEERREILGTRLLPLVRFCHMTCRKLR 407


>07_03_0493 +
           18747427-18748356,18748594-18748697,18749586-18749795,
           18749992-18750597,18750819-18751095,18751163-18751310,
           18751957-18752044,18752167-18752284
          Length = 826

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -1

Query: 227 AHQRSW*QS*LQQVSECKYDEGWQHNAHRTNQGHTEPAL*SELSLQDPCAQV 72
           A QR   Q  L  VS     EGWQH++        +  L  E+ ++   AQV
Sbjct: 671 ADQRVSAQCSLAPVSHLHQQEGWQHSSFEHQHHENQNFLEMEVRVRSEMAQV 722


>03_02_0901 + 12267042-12267182,12267949-12268095,12268163-12268253,
            12268367-12268485,12268779-12268969,12269440-12269650,
            12270072-12270309,12270944-12271329,12271933-12271956,
            12271984-12272077,12272341-12272525,12273025-12273255,
            12273665-12273730,12273816-12274034,12274764-12275003,
            12275244-12275423,12276269-12276535,12276612-12276815,
            12276896-12277048
          Length = 1128

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +2

Query: 14   QDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIY 178
            +D+I+ +    ++    V+VP + +LV TA    L P D  W  +R  A LR  +
Sbjct: 947  EDRILMSDIVFMRAWVNVEVPTYCNLVTTA----LQPQDETWQGMRTTAELRRAH 997


>11_06_0675 +
           26139284-26139745,26139932-26139980,26140118-26140215,
           26140378-26140588,26140707-26140947,26141051-26141216,
           26141308-26141451
          Length = 456

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 238 WSYTFTFCRSSGSIARKALQSLEALK 315
           WSY + FC+  G IAR+  + L+ LK
Sbjct: 97  WSYAYRFCK-GGRIARELRKVLKDLK 121


>11_02_0051 + 7776312-7780228,7780627-7780695,7781920-7781979,
            7782225-7782324,7782720-7782801,7782928-7782940,
            7783621-7783681
          Length = 1433

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +1

Query: 241  SYTFTFCRSSGSIARKALQSLEALKL 318
            S + T CRSS S A   L+SLE+L L
Sbjct: 1104 SISITCCRSSSSFAIGHLRSLESLSL 1129


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,899,567
Number of Sequences: 37544
Number of extensions: 236713
Number of successful extensions: 584
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)