Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00519
         (491 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54531| Best HMM Match : Ribosomal_S19e (HMM E-Value=5e-30)          59   2e-09
SB_38543| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_8022| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.4  

>SB_54531| Best HMM Match : Ribosomal_S19e (HMM E-Value=5e-30)
          Length = 92

 Score = 58.8 bits (136), Expect = 2e-09
 Identities = 21/32 (65%), Positives = 29/32 (90%)
 Frame = +2

Query: 56  TGKVKVPEHMDLVKTARFKELAPYDPDWFYVR 151
           +G +K+P+ +DLVKT +FKELAPYDPDW+Y+R
Sbjct: 2   SGNLKIPDWVDLVKTGKFKELAPYDPDWYYIR 33



 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 23/39 (58%), Positives = 30/39 (76%)
 Frame = +1

Query: 268 SGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 384
           S S+AR  L+ LE +KLVEK   GGR +T+QG+RD+DRI
Sbjct: 50  SASVARSVLKGLEQIKLVEKASTGGRNITSQGQRDMDRI 88


>SB_38543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 346

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 7   C*TRQDC*NCRCSLKKNGQSQGT*AHGSCKDSSLQRAGSV 126
           C   QDC + RC  +KNG  + T A G CK S    + ++
Sbjct: 301 CNCMQDCSSSRCFWRKNG-IECTPACGQCKGSDCTNSPAI 339


>SB_8022| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 386

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
 Frame = +2

Query: 20  KIVKTVAAHLKKTGKVKVPEHMD-LVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPVG 196
           K  KT          ++VP  ++ L  T R  E+  +   W  V+C      IY+ S + 
Sbjct: 229 KYTKTFVIMSGSNRPMRVPHSLEPLTLTNRVAEVT-FCRSWNAVKCTKYCALIYLHSRLD 287

Query: 197 VKTVTKIFG 223
            + V K+ G
Sbjct: 288 TQPVNKVIG 296


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,679,603
Number of Sequences: 59808
Number of extensions: 277353
Number of successful extensions: 633
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)