Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00519
         (491 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61170.1 68418.m07674 40S ribosomal protein S19 (RPS19C) 40S ...   103   5e-23
At5g15520.1 68418.m01817 40S ribosomal protein S19 (RPS19B) 40S ...   103   7e-23
At3g02080.1 68416.m00173 40S ribosomal protein S19 (RPS19A) simi...   102   1e-22
At4g16095.1 68417.m02440 disease resistance protein-related cont...    29   1.3  
At5g45800.1 68418.m05632 leucine-rich repeat transmembrane prote...    29   1.7  
At1g14300.1 68414.m01695 expressed protein contains Pfam PF04063...    29   1.7  
At5g16500.1 68418.m01928 protein kinase family protein contains ...    27   6.9  
At2g39440.1 68415.m04841 expressed protein                             27   9.1  

>At5g61170.1 68418.m07674 40S ribosomal protein S19 (RPS19C) 40S
           ribsomal protein S19, Oryza sativa, SWISSPROT:RS19_ORYSA
          Length = 143

 Score =  103 bits (248), Expect = 5e-23
 Identities = 43/83 (51%), Positives = 60/83 (72%)
 Frame = +2

Query: 2   KDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYI 181
           KDV   + VK  AAHLK++GK+++P   D+VKT + KELAPYDPDW+Y+R A++ R +Y+
Sbjct: 8   KDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAASMARKVYL 67

Query: 182 RSPVGVKTVTKIFGGRKRNGVTP 250
           R  +GV    +I+GG KRNG  P
Sbjct: 68  RGGLGVGAFRRIYGGSKRNGSRP 90



 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 20/43 (46%), Positives = 31/43 (72%)
 Frame = +1

Query: 256 FCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 384
           FC+SSG +AR  LQ L+ + +V+    GGR +T+ G+RDLD++
Sbjct: 93  FCKSSGGVARHILQQLQTMNIVDLDTKGGRKITSSGQRDLDQV 135


>At5g15520.1 68418.m01817 40S ribosomal protein S19 (RPS19B) 40S
           RIBOSOMAL PROTEIN S19 - Oryza sativa,
           SWISSPROT:RS19_ORYSA
          Length = 143

 Score =  103 bits (247), Expect = 7e-23
 Identities = 44/83 (53%), Positives = 59/83 (71%)
 Frame = +2

Query: 2   KDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYI 181
           KDV     VK  A+HLK++GK+++P   D+VKT R KELAPYDPDW+Y+R A++ R IY+
Sbjct: 8   KDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAASMARKIYL 67

Query: 182 RSPVGVKTVTKIFGGRKRNGVTP 250
           R  +GV    +I+GG KRNG  P
Sbjct: 68  RGGLGVGAFRRIYGGSKRNGSRP 90



 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 23/43 (53%), Positives = 31/43 (72%)
 Frame = +1

Query: 256 FCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 384
           FC+SSG IAR  LQ LE + +VE    GGR +T+ G+RDLD++
Sbjct: 93  FCKSSGGIARHILQQLETMSIVELDTKGGRRITSSGQRDLDQV 135


>At3g02080.1 68416.m00173 40S ribosomal protein S19 (RPS19A) similar
           to 40S ribosomal protein S19 GB:P40978 [Oryza sativa]
          Length = 143

 Score =  102 bits (245), Expect = 1e-22
 Identities = 42/83 (50%), Positives = 59/83 (71%)
 Frame = +2

Query: 2   KDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYI 181
           KDV     VK  A+HLK++GK+++P   D+VKT + KELAPYDPDW+Y+R A++ R +Y+
Sbjct: 8   KDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAASMARKVYL 67

Query: 182 RSPVGVKTVTKIFGGRKRNGVTP 250
           R  +GV    +I+GG KRNG  P
Sbjct: 68  RGGLGVGAFRRIYGGSKRNGSRP 90



 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 23/43 (53%), Positives = 31/43 (72%)
 Frame = +1

Query: 256 FCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 384
           FC+SSG IAR  LQ LE + +VE    GGR +T+ G+RDLD++
Sbjct: 93  FCKSSGGIARHILQQLETMNIVELDTKGGRRITSSGQRDLDQV 135


>At4g16095.1 68417.m02440 disease resistance protein-related
           contains weak similarity to rpp8 [Arabidopsis thaliana]
           gi|3901294|gb|AAC78631
          Length = 187

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 340 HRPELSQQASMPPTIAKPCVQYCLM 266
           H P L  Q   PP +   C++YC M
Sbjct: 86  HMPRLPDQHRFPPNLTNICLRYCCM 110


>At5g45800.1 68418.m05632 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 666

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +2

Query: 41  AHLKKTGKVKVPEHMDLVK-TARFKELAPYDPDWFYVRCAAILRHIYIRS 187
           +H   +  V  P   D  + T  F+ ++ ++  WF   C+A++ H+ + S
Sbjct: 15  SHSDSSSTVSCPNGTDFHQLTTVFRYVSGFNSSWFSSNCSAVITHVVLPS 64


>At1g14300.1 68414.m01695 expressed protein contains Pfam PF04063:
           Domain of unknown function (DUF383) and  PF04064: Domain
           of unknown function (DUF384)
          Length = 339

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +1

Query: 253 TFCRSSGSIARKALQSLEALKL-VEKVQDGGRILTTQGRRDLDRI 384
           +FCRSSG  A    + + ++ + + K +DG ++L    RR L +I
Sbjct: 142 SFCRSSGETADDQFEHVGSILVNISKTEDGRKLLLEPKRRLLKQI 186


>At5g16500.1 68418.m01928 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 636

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 5   DVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELA 121
           +VE D+    V A  K+T + +  E    VKT  F+ELA
Sbjct: 30  NVEHDEFRPPVVATTKRTEEREPAEQQPPVKTFNFRELA 68


>At2g39440.1 68415.m04841 expressed protein
          Length = 773

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 194 GVKTVTKIFGGRKRNGVTPSLSAGHQAVLHARLCN 298
           GVKT    F GRK  G T SL +G+   +  +  N
Sbjct: 133 GVKTEEAHFRGRKLQGATISLPSGYSGFVLRQASN 167


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,400,300
Number of Sequences: 28952
Number of extensions: 183688
Number of successful extensions: 439
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)