Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00518
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    31   0.17 
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    28   1.2  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    26   4.9  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    25   8.6  

>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 18/38 (47%), Positives = 24/38 (63%)
 Frame = -3

Query: 350 SKPSHAKNAPPTMLTIRAVKNPMILKSQ*LLTDIQYKL 237
           S+P HA+ A       RAVKNPMIL+ +  LTD +Y +
Sbjct: 2   SQPLHARFAT------RAVKNPMILEKERQLTDSKYHI 33


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = -3

Query: 476 RQSTLI*CFRPLNSRNTTGLKLQCFPPLFP-MR*SRAEVPRLGSKPSHAKNAPP 318
           R    I  F+P   R++ G      PP  P +  +R++V R   KP    + PP
Sbjct: 489 RMQQFINWFKPSKERSSNGNSDSASPPPVPRLSITRSQVSREPEKPEEIPSVPP 542


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +1

Query: 388 GNNGGKHCSFSPVVLREFNGRKHYIKVDCRRH 483
           G++    C    +V+   NGR+ Y++   RRH
Sbjct: 485 GHHKNPKCRAKKLVVESRNGRREYVQDAVRRH 516


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -3

Query: 416 KLQCFPPLFPMR*SRAEVPRLGSKPSHAKNAPPTMLTIRA 297
           K   F  LF  +  + E+P + S P H  +APP    I A
Sbjct: 732 KESIFGSLFGSKKKQTEIPPVSSSPPH-NDAPPKAKPISA 770


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,154,412
Number of Sequences: 5004
Number of extensions: 40996
Number of successful extensions: 91
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)