Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00516
(698 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10... 109 5e-25
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a... 107 2e-24
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 30 0.28
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb... 29 0.64
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M... 29 0.85
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch... 28 1.5
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S... 28 1.5
SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch... 27 2.0
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 27 2.6
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 27 3.4
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p... 26 4.5
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces... 26 6.0
SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated |Schizosaccharom... 26 6.0
SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|ch... 25 7.9
SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 25 7.9
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone... 25 7.9
>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
L10a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 216
Score = 109 bits (261), Expect = 5e-25
Identities = 48/76 (63%), Positives = 58/76 (76%)
Frame = +1
Query: 19 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKNIPRPK 198
SKVS + V +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+KL N+PRP
Sbjct: 2 SKVSPANIRSSVETILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPN 61
Query: 199 MQVCVLGDQQHCDEAK 246
M +C+LGD D AK
Sbjct: 62 MSICILGDAHDLDRAK 77
Score = 82.2 bits (194), Expect = 6e-17
Identities = 39/53 (73%), Positives = 44/53 (83%)
Frame = +3
Query: 348 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCL 506
SE LIKQIPRLLGPGL+KAGKFP +SH + + KI EVK TIKFQ+KKVLCL
Sbjct: 112 SEVLIKQIPRLLGPGLSKAGKFPSPVSHSDDLYGKIIEVKSTIKFQLKKVLCL 164
Score = 77.0 bits (181), Expect = 2e-15
Identities = 36/51 (70%), Positives = 42/51 (82%)
Frame = +2
Query: 509 VAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 661
VAVGHVDM ++LA N+ L+INFLVSLLKK WQN+ SL +KSTMG P RLY
Sbjct: 166 VAVGHVDMAEEQLAANLSLAINFLVSLLKKGWQNIGSLVIKSTMGKPYRLY 216
>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
L10a|Schizosaccharomyces pombe|chr 3|||Manual
Length = 216
Score = 107 bits (256), Expect = 2e-24
Identities = 48/76 (63%), Positives = 59/76 (77%)
Frame = +1
Query: 19 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKNIPRPK 198
SKVS ++ V +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+KL N+PRP
Sbjct: 2 SKVSVASVRSNVEQILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPN 61
Query: 199 MQVCVLGDQQHCDEAK 246
M +C+LGD D AK
Sbjct: 62 MAICILGDAHDLDRAK 77
Score = 82.6 bits (195), Expect = 5e-17
Identities = 39/53 (73%), Positives = 44/53 (83%)
Frame = +3
Query: 348 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCL 506
SE LIKQIPRLLGPGL+KAGKFP +SH + + KI EVK TIKFQ+KKVLCL
Sbjct: 112 SEVLIKQIPRLLGPGLSKAGKFPSPVSHADDLYGKITEVKSTIKFQLKKVLCL 164
Score = 74.1 bits (174), Expect = 2e-14
Identities = 33/51 (64%), Positives = 42/51 (82%)
Frame = +2
Query: 509 VAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 661
VAVGHV+M+ ++L N+ L++NFLVSLLKK WQN+ SL +KSTMG P RLY
Sbjct: 166 VAVGHVEMSEEQLIANIMLAVNFLVSLLKKGWQNIGSLVVKSTMGKPHRLY 216
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 30.3 bits (65), Expect = 0.28
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Frame = +1
Query: 1 LTNKMSSKVSRDTLYE---CVNAVLQSSKDKKRNFLETVELQIGLKNYD-PQKDKRFSG 165
+T+K++ V ++ Y C N +++SS K NF +TV + +YD P+ D + G
Sbjct: 920 VTSKLNDLVIKEFTYPSSLCDNVLVRSSPSPKNNFDDTVFISYTSIDYDSPELDSVYEG 978
>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 519
Score = 29.1 bits (62), Expect = 0.64
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = -1
Query: 305 LFVLIQFFQSLSIHTWHFKVLASSQCCWSPRTQTCIFGRGMFFSFTV 165
L V + Q +++ W +L Q ++ QT G F SFT+
Sbjct: 159 LLVFVCATQDIAVDGWSLNMLNPEQLSYASTAQTVGLNTGFFLSFTI 205
>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 535
Score = 28.7 bits (61), Expect = 0.85
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = -2
Query: 583 HKEVDGKMHILSKLIRSHVHMANCYERHNTFFIWNLMVPLTSSIFCV 443
++++D +L + VH+ R NT F + L + ++ IFC+
Sbjct: 228 NEQLDSNFTLLDAYLEPLVHLHEYSRRSNTLFFFYLPIVMSILIFCL 274
>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 701
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 508 RSSWPCGHDS**ACSECASFHQLPCVTAQETLAEC 612
RS H S + S ++HQL CV Q+ L+EC
Sbjct: 45 RSQLCLSHPSINSLSSFQTYHQLLCVLEQKHLSEC 79
>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +2
Query: 509 VAVGHVDMTPDELAQNVHLSINFLVS-LLKKHWQNVRSLHMKST 637
+ GHV T ELA+NV + F+ ++ + + S+H+K++
Sbjct: 201 IKCGHVSNTSTELAENVESILQFVSKHIVPDGAKGIASIHLKTS 244
>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 587
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +2
Query: 482 PNEEGVVSFVAVGHVDMTPDE-LAQNVHLSI-NFLVSLLKKHWQNVRSLHMKS 634
P+++G+ + + +T D+ L +N L+ +F V LLK +W + H ++
Sbjct: 171 PHDKGIAACIEKNLTPITWDKNLVENHKLADRDFAVGLLKNYWSQLHEFHSEN 223
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -1
Query: 566 KDAHSEQAHQESCPHGQLLRKTQH 495
K H H+E C HG+ LR H
Sbjct: 358 KPDHKPWKHEEHCHHGKFLRPVPH 381
>SPCC1183.07 |||U3 snoRNP-associated protein
Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1690
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +1
Query: 160 SGTVKLKNIPRPKMQVCVLGDQQHCDEAKTLKCHVWMLR 276
SGT +L RPK + + D + LK H+ LR
Sbjct: 64 SGTAELSKKTRPKKKGSKKSSKSELDNEENLKVHIQSLR 102
>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 584
Score = 26.2 bits (55), Expect = 4.5
Identities = 22/70 (31%), Positives = 33/70 (47%)
Frame = -2
Query: 241 PRHNAAGLQERKLAFSAAVCFLALQCRRNACPSVGHSSSDQFEALQSPKSYVSCP*RIEE 62
P H A LQE A AA+ L+ ++NA G +S D +AL P S +
Sbjct: 317 PEHELAALQEHNEAHDAAMRQYELERQQNAM-LPGLASIDGLQAL--PHLDFSDSAVTNQ 373
Query: 61 RHSRTRRACH 32
HS+++ + H
Sbjct: 374 SHSQSQNSLH 383
>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 693
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -1
Query: 464 DFINLLRHGLLVGEKTREFTSFVQTGTQQTGNLLDQ 357
D L RH L + + F + Q GT+ NL DQ
Sbjct: 424 DLFRLFRHSNLSTSREQIFQNLEQLGTRVIKNLTDQ 459
>SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 220
Score = 25.8 bits (54), Expect = 6.0
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +2
Query: 536 PDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY*FNTINFMT 688
P E +N H+ + ++L+ HW+ + SL M++ Q F+ +NFMT
Sbjct: 30 PSEEQRNEHVLKKWENNVLR-HWKILFSLFMQTCGDSVQGNAAFSILNFMT 79
>SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 392 FEQSW*I-PWSSLPPGVHDAED**SQGNH*VPNEEGVV 502
F + W I P+ SLP G H +E PN+EG V
Sbjct: 36 FPKEWSILPFLSLPDGAHSSEKDFVYFTLPFPNDEGTV 73
>SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 288
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +1
Query: 10 KMSSKVSRDTLYECVNAVLQSSKDKKRNFLETV 108
K K DT+ E A LQSS DK NF +T+
Sbjct: 215 KRPDKSPFDTMTE---ATLQSSSDKSENFTKTL 244
>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 809
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/19 (47%), Positives = 16/19 (84%)
Frame = +1
Query: 52 VNAVLQSSKDKKRNFLETV 108
+NA+L+ SK+KK N +E++
Sbjct: 370 INALLERSKEKKANVIESL 388
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,955,488
Number of Sequences: 5004
Number of extensions: 61909
Number of successful extensions: 191
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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