Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00516
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal pro...   114   5e-26
AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal...    91   5e-19
AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal pro...    91   5e-19
Z81576-2|CAB04644.1|  522|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z77663-10|CAB01204.1|  543|Caenorhabditis elegans Hypothetical p...    29   2.4  
Z70206-1|CAA94124.1|  407|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AF038613-11|AAB92054.2|  836|Caenorhabditis elegans Mammalian el...    27   9.8  

>AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform a protein.
          Length = 216

 Score =  114 bits (275), Expect = 5e-26
 Identities = 51/75 (68%), Positives = 62/75 (82%)
 Frame = +1

Query: 19  SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKNIPRPK 198
           SKVSR++L E +  VL+ S +K R F ET+ELQIGLKNYDPQKDKRFSG+++LK+IPRP 
Sbjct: 2   SKVSRESLNEAIAEVLKGSSEKPRKFRETIELQIGLKNYDPQKDKRFSGSIRLKHIPRPN 61

Query: 199 MQVCVLGDQQHCDEA 243
           M+VCV GDQ H DEA
Sbjct: 62  MKVCVFGDQHHLDEA 76



 Score = 91.5 bits (217), Expect = 5e-19
 Identities = 40/54 (74%), Positives = 48/54 (88%)
 Frame = +3

Query: 348 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLS 509
           SESLIKQIPR+LGPGLNKAGKFP +++H ES+  K DE++ T+KFQMKKVLCLS
Sbjct: 112 SESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLS 165



 Score = 84.2 bits (199), Expect = 8e-17
 Identities = 38/51 (74%), Positives = 45/51 (88%)
 Frame = +2

Query: 509 VAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 661
           VAVGHV +T +EL  N+ LSINFLVSLLKK+WQNVRSL++KSTMG PQR+Y
Sbjct: 166 VAVGHVGLTQEELVSNISLSINFLVSLLKKNWQNVRSLNIKSTMGKPQRVY 216


>AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal
           protein L10A protein.
          Length = 186

 Score = 91.5 bits (217), Expect = 5e-19
 Identities = 40/54 (74%), Positives = 48/54 (88%)
 Frame = +3

Query: 348 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLS 509
           SESLIKQIPR+LGPGLNKAGKFP +++H ES+  K DE++ T+KFQMKKVLCLS
Sbjct: 82  SESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLS 135



 Score = 84.2 bits (199), Expect = 8e-17
 Identities = 38/51 (74%), Positives = 45/51 (88%)
 Frame = +2

Query: 509 VAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 661
           VAVGHV +T +EL  N+ LSINFLVSLLKK+WQNVRSL++KSTMG PQR+Y
Sbjct: 136 VAVGHVGLTQEELVSNISLSINFLVSLLKKNWQNVRSLNIKSTMGKPQRVY 186



 Score = 74.1 bits (174), Expect = 9e-14
 Identities = 30/39 (76%), Positives = 35/39 (89%)
 Frame = +1

Query: 127 KNYDPQKDKRFSGTVKLKNIPRPKMQVCVLGDQQHCDEA 243
           KNYDPQKDKRFSG+++LK+IPRP M+VCV GDQ H DEA
Sbjct: 8   KNYDPQKDKRFSGSIRLKHIPRPNMKVCVFGDQHHLDEA 46


>AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform b protein.
          Length = 155

 Score = 91.5 bits (217), Expect = 5e-19
 Identities = 40/54 (74%), Positives = 48/54 (88%)
 Frame = +3

Query: 348 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLS 509
           SESLIKQIPR+LGPGLNKAGKFP +++H ES+  K DE++ T+KFQMKKVLCLS
Sbjct: 51  SESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLS 104



 Score = 84.2 bits (199), Expect = 8e-17
 Identities = 38/51 (74%), Positives = 45/51 (88%)
 Frame = +2

Query: 509 VAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 661
           VAVGHV +T +EL  N+ LSINFLVSLLKK+WQNVRSL++KSTMG PQR+Y
Sbjct: 105 VAVGHVGLTQEELVSNISLSINFLVSLLKKNWQNVRSLNIKSTMGKPQRVY 155



 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +1

Query: 199 MQVCVLGDQQHCDEA 243
           M+VCV GDQ H DEA
Sbjct: 1   MKVCVFGDQHHLDEA 15


>Z81576-2|CAB04644.1|  522|Caenorhabditis elegans Hypothetical
           protein R10E8.3 protein.
          Length = 522

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -1

Query: 494 LLHLELNGS--LDFINLLRHGLLVGEKTREFTSFVQTGTQQTGN 369
           + HLEL GS  L+FI LL    L  +K R+ T F   G    GN
Sbjct: 354 MAHLELKGSSELEFIQLL--DCLDAKKLRKLTIFATVGDVNNGN 395


>Z77663-10|CAB01204.1|  543|Caenorhabditis elegans Hypothetical
           protein F53F4.11 protein.
          Length = 543

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = +2

Query: 497 VVSFVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPP 649
           V S V VGH+  +  +L +N+   +  + S     + N+RS+++ ++ G P
Sbjct: 361 VRSCVNVGHLGQSSADLKENIDTVLEKIASKCPGGFANIRSIYLGASDGKP 411


>Z70206-1|CAA94124.1|  407|Caenorhabditis elegans Hypothetical
           protein C49F8.1 protein.
          Length = 407

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +2

Query: 509 VAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPP 649
           V + H+ ++P+ L Q   L+  F  +     W+ +R   MKS +G P
Sbjct: 350 VTIDHLRISPESLVQIARLAQAFGTN---PDWKKLRLADMKSALGTP 393


>AF038613-11|AAB92054.2|  836|Caenorhabditis elegans Mammalian
           elks/cast/erc/rab6 interactingprotein homolog protein 1
           protein.
          Length = 836

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 360 IKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIK 479
           I +IP   G GLN A ++  L    ++M +K+++   +IK
Sbjct: 142 ISRIPTGTGSGLNIAREYEQLKVEYDTMMEKLNQTMNSIK 181


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,600,702
Number of Sequences: 27780
Number of extensions: 362046
Number of successful extensions: 939
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)