Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00516
(698 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g27530.2 68415.m03331 60S ribosomal protein L10A (RPL10aB) 111 3e-25
At2g27530.1 68415.m03330 60S ribosomal protein L10A (RPL10aB) 111 3e-25
At1g08360.1 68414.m00925 60S ribosomal protein L10A (RPL10aA) si... 110 1e-24
At5g22440.1 68418.m02617 60S ribosomal protein L10A (RPL10aC) 105 3e-23
At3g58660.1 68416.m06538 60S ribosomal protein-related contains ... 40 0.001
At2g42650.1 68415.m05278 60S ribosomal protein-related similar t... 40 0.002
At1g06380.1 68414.m00674 ribosomal protein-related similar to PB... 36 0.026
At1g08400.1 68414.m00929 chromosome structural maintenance prote... 30 1.3
At5g60760.1 68418.m07623 2-phosphoglycerate kinase-related conta... 30 1.7
At5g14210.1 68418.m01660 leucine-rich repeat transmembrane prote... 30 1.7
At3g45090.2 68416.m04862 2-phosphoglycerate kinase-related conta... 29 2.2
At3g45090.1 68416.m04863 2-phosphoglycerate kinase-related conta... 29 2.2
At5g10610.1 68418.m01228 cytochrome P450 family protein similar ... 29 3.9
At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01... 28 6.8
>At2g27530.2 68415.m03331 60S ribosomal protein L10A (RPL10aB)
Length = 216
Score = 111 bits (268), Expect = 3e-25
Identities = 48/78 (61%), Positives = 64/78 (82%)
Frame = +1
Query: 19 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKNIPRPK 198
SK+ + + E + + S++KKRNF+ETVELQIGLKNYDPQKDKRFSG+VKL +IPRPK
Sbjct: 2 SKLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61
Query: 199 MQVCVLGDQQHCDEAKTL 252
M++C+LGD QH +EA+ +
Sbjct: 62 MKICMLGDAQHVEEAEKM 79
Score = 91.5 bits (217), Expect = 5e-19
Identities = 40/53 (75%), Positives = 48/53 (90%)
Frame = +3
Query: 348 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCL 506
SES+IKQIPRLLGPGLNKAGKFP L+SHQES+ K++E K T+KFQ+KKVLC+
Sbjct: 112 SESVIKQIPRLLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKKVLCM 164
Score = 78.6 bits (185), Expect = 4e-15
Identities = 34/51 (66%), Positives = 44/51 (86%)
Frame = +2
Query: 509 VAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 661
VAVG++ M +L QNV +S+NFLVSLLKK+WQNVR L++KSTMGPPQR++
Sbjct: 166 VAVGNLSMEEKQLFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPQRIF 216
>At2g27530.1 68415.m03330 60S ribosomal protein L10A (RPL10aB)
Length = 216
Score = 111 bits (268), Expect = 3e-25
Identities = 48/78 (61%), Positives = 64/78 (82%)
Frame = +1
Query: 19 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKNIPRPK 198
SK+ + + E + + S++KKRNF+ETVELQIGLKNYDPQKDKRFSG+VKL +IPRPK
Sbjct: 2 SKLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61
Query: 199 MQVCVLGDQQHCDEAKTL 252
M++C+LGD QH +EA+ +
Sbjct: 62 MKICMLGDAQHVEEAEKM 79
Score = 91.5 bits (217), Expect = 5e-19
Identities = 40/53 (75%), Positives = 48/53 (90%)
Frame = +3
Query: 348 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCL 506
SES+IKQIPRLLGPGLNKAGKFP L+SHQES+ K++E K T+KFQ+KKVLC+
Sbjct: 112 SESVIKQIPRLLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKKVLCM 164
Score = 78.6 bits (185), Expect = 4e-15
Identities = 34/51 (66%), Positives = 44/51 (86%)
Frame = +2
Query: 509 VAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 661
VAVG++ M +L QNV +S+NFLVSLLKK+WQNVR L++KSTMGPPQR++
Sbjct: 166 VAVGNLSMEEKQLFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPQRIF 216
>At1g08360.1 68414.m00925 60S ribosomal protein L10A (RPL10aA)
similar to 60S ribosomal protein L10A GB:AAC73045
GI:3860277 from [Arabidopsis thaliana]
Length = 216
Score = 110 bits (264), Expect = 1e-24
Identities = 47/78 (60%), Positives = 63/78 (80%)
Frame = +1
Query: 19 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKNIPRPK 198
SK+ + + E + + S+ KKRNF+ET+ELQIGLKNYDPQKDKRFSG+VKL +IPRPK
Sbjct: 2 SKLQSEAVREAITTITGKSEAKKRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61
Query: 199 MQVCVLGDQQHCDEAKTL 252
M++C+LGD QH +EA+ +
Sbjct: 62 MKICMLGDAQHVEEAEKM 79
Score = 91.9 bits (218), Expect = 4e-19
Identities = 40/53 (75%), Positives = 48/53 (90%)
Frame = +3
Query: 348 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCL 506
SES+IKQIPRLLGPGLNKAGKFP L+SHQES+ K++E K T+KFQ+KKVLC+
Sbjct: 112 SESVIKQIPRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCM 164
Score = 77.8 bits (183), Expect = 6e-15
Identities = 33/51 (64%), Positives = 44/51 (86%)
Frame = +2
Query: 509 VAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 661
VAVG++ M ++ QNV +S+NFLVSLLKK+WQNVR L++KSTMGPPQR++
Sbjct: 166 VAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPQRIF 216
>At5g22440.1 68418.m02617 60S ribosomal protein L10A (RPL10aC)
Length = 217
Score = 105 bits (252), Expect = 3e-23
Identities = 45/79 (56%), Positives = 64/79 (81%), Gaps = 1/79 (1%)
Frame = +1
Query: 19 SKVSRDTLYECVNAVLQSSKDKK-RNFLETVELQIGLKNYDPQKDKRFSGTVKLKNIPRP 195
SK+ + + E +++++ K+ K RNF ET+ELQIGLKNYDPQKDKRFSG+VKL ++PRP
Sbjct: 2 SKLQSEAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPRP 61
Query: 196 KMQVCVLGDQQHCDEAKTL 252
KM++C+LGD QH +EA+ +
Sbjct: 62 KMKICMLGDAQHVEEAEKI 80
Score = 91.9 bits (218), Expect = 4e-19
Identities = 40/53 (75%), Positives = 48/53 (90%)
Frame = +3
Query: 348 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCL 506
SES+IKQIPRLLGPGLNKAGKFP L+SHQES+ K++E K T+KFQ+KKVLC+
Sbjct: 113 SESVIKQIPRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCM 165
Score = 75.4 bits (177), Expect = 3e-14
Identities = 32/51 (62%), Positives = 43/51 (84%)
Frame = +2
Query: 509 VAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 661
VAVG++ M ++ QNV +S+NFLVSLLKK+WQNVR L++KSTMGPP R++
Sbjct: 167 VAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPNRVF 217
>At3g58660.1 68416.m06538 60S ribosomal protein-related contains
weak similarity to 60S ribosomal protein L10A (CSA-19)
(NEDD-6) (Swiss-Prot:P53026) [Mus musculus]
Length = 446
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/46 (41%), Positives = 26/46 (56%)
Frame = +2
Query: 494 GVVSFVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMK 631
G S + VG + M E+ +NV ++N LV L W VRSLH+K
Sbjct: 204 GTCSVIKVGKLSMDICEITENVMATLNGLVEFLPNKWTYVRSLHLK 249
>At2g42650.1 68415.m05278 60S ribosomal protein-related similar to
PBK1 protein (GI:3668141) [Homo sapiens]; weak
similarity to 60S ribosomal protein L10a.
(Swiss-Prot:Q9SW75) [Chlamydomonas reinhardtii]
Length = 372
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/46 (34%), Positives = 28/46 (60%)
Frame = +2
Query: 494 GVVSFVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMK 631
G S + V + M D++ +NV ++N +V +L W+ +RSLH+K
Sbjct: 184 GSCSAIKVAKLSMESDDIVENVTATLNGVVDVLPSRWKYIRSLHLK 229
>At1g06380.1 68414.m00674 ribosomal protein-related similar to PBK1
protein (GI:3668141) {Homo sapiens}; weakly similar to
60S ribosomal protein L10a. (SP:Q963B6) [Fall armyworm]
{Spodoptera frugiperda}
Length = 254
Score = 35.9 bits (79), Expect = 0.026
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = +2
Query: 494 GVVSFVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMK 631
G S V V + M +E+A+NV ++N + L+ W+NV+ H+K
Sbjct: 195 GTCSVVKVAKLSMGRNEIAENVVAAMNGIGDLVPGRWKNVKLFHLK 240
>At1g08400.1 68414.m00929 chromosome structural maintenance
protein-related contains weak similarity to
RAD50-interacting protein 1 [Homo sapiens]
gi|11967435|gb|AAG42101
Length = 804
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +1
Query: 16 SSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKR 156
+SKV + N +L DKK ++ ++ L GL+ ++ QK+KR
Sbjct: 232 TSKVEHGEVDSIPNPLLLMQGDKKESYSQSFLLLCGLQQHNTQKEKR 278
>At5g60760.1 68418.m07623 2-phosphoglycerate kinase-related contains
weak similarity to 2-phosphoglycerate kinase (GI:467751)
[Methanothermus fervidus]
Length = 738
Score = 29.9 bits (64), Expect = 1.7
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +2
Query: 545 LAQNVHLSINFLVSLLKKH 601
+ + VHLS+NF++ L+KKH
Sbjct: 322 IVEGVHLSLNFVMGLMKKH 340
>At5g14210.1 68418.m01660 leucine-rich repeat transmembrane protein
kinase, putative
Length = 812
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -2
Query: 583 HKEVDGKMHILSKLIRSHVHMANCYERH 500
H E+ GK+ LSKL SH+HM + E H
Sbjct: 222 HNEISGKLPDLSKL--SHLHMLDLRENH 247
>At3g45090.2 68416.m04862 2-phosphoglycerate kinase-related contains
weak similarity to 2-phosphoglycerate kinase (GI:467751)
[Methanothermus fervidus]
Length = 698
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +2
Query: 545 LAQNVHLSINFLVSLLKKH 601
+ + VHLS+NF++ L+KKH
Sbjct: 279 VVEGVHLSLNFVMGLMKKH 297
>At3g45090.1 68416.m04863 2-phosphoglycerate kinase-related contains
weak similarity to 2-phosphoglycerate kinase (GI:467751)
[Methanothermus fervidus]
Length = 717
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +2
Query: 545 LAQNVHLSINFLVSLLKKH 601
+ + VHLS+NF++ L+KKH
Sbjct: 298 VVEGVHLSLNFVMGLMKKH 316
>At5g10610.1 68418.m01228 cytochrome P450 family protein similar to
Cytochrome P450 91A1 (SP:Q9FG65) [Arabidopsis
thaliana]; similar to cytochrome P450, Helianthus
tuberosus, EMBL:HTCYP81L
Length = 500
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 97 LETVELQIGLKNYDPQKDKRFSGTVKLKNIPRPKMQVC 210
L V + G+K DP+ +KRF KL+ M VC
Sbjct: 185 LRLVSGKRGVKKSDPESEKRFLDDFKLRFFSSMSMNVC 222
>At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01612:
reticulocyte binding protein; contains TIGRFAM TIGR00864:
polycystin cation channel protein; similar to
fimbriae-associated protein Fap1 [Streptococcus
parasanguinis] (GI:3929312)
Length = 1498
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/62 (27%), Positives = 26/62 (41%)
Frame = -2
Query: 187 VCFLALQCRRNACPSVGHSSSDQFEALQSPKSYVSCP*RIEERHSRTRRACHETL*TTFC 8
+ + A+ + HS + EALQS S V +++ SR R H TT
Sbjct: 867 ISYKAVMAEERSARKAMHSKRQEIEALQSMISRVKSAASVDDIDSRVRNMEHTMQHTTLS 926
Query: 7 LS 2
L+
Sbjct: 927 LN 928
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,641,790
Number of Sequences: 28952
Number of extensions: 333362
Number of successful extensions: 852
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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