Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00515
         (450 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos...    33   0.015
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S...    28   0.76 
SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p...    25   7.1  
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe...    24   9.4  
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5...    24   9.4  

>SPBC215.03c |csn1||COP9/signalosome complex subunit
           Csn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 33.5 bits (73), Expect = 0.015
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -1

Query: 144 DMVSKIYAFCGLKFSCLKGFDSGVTLIFPVASDTSERI 31
           ++ S IYA+CGL   CL  ++  +     V +DTS+ I
Sbjct: 184 ELTSPIYAYCGLANFCLGDYEEALAHFLKVETDTSDGI 221


>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
           Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 27.9 bits (59), Expect = 0.76
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +1

Query: 61  KDQSDATIEAFQARELESTERVYFGHHIWQHLRLDREAGYRKREISGHDESSGI 222
           K+ ++A+I  F A ELE  +  Y   HIWQ    + E   ++ E  G D   GI
Sbjct: 33  KESTEASINMFLA-ELERLQLEYGKEHIWQ----NEELNLQRVEYQGKDCILGI 81


>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 301

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 14/57 (24%), Positives = 25/57 (43%)
 Frame = +1

Query: 43  SVRRHGKDQSDATIEAFQARELESTERVYFGHHIWQHLRLDREAGYRKREISGHDES 213
           S  R+GK  S +T++  +  +   TER  +G     H R   +    + +I  +  S
Sbjct: 177 SRERNGKRTSRSTLDRKRFHDASDTERNRYGRSPSPHSRFSEKPRGERYDIRSYSRS 233


>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 580

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 106 LESTERVYFGHHIWQHLRLDREAGYRKREISG 201
           L   +R+ F  H    ++L +EAGYRK+ + G
Sbjct: 397 LPDADRIRF--HFKDAVKLLKEAGYRKQLVPG 426


>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
           Taf72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 643

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +2

Query: 38  SEVSDATGKIKVTPLSKPFKQENLSPQNAYIL 133
           + V D+ G +++   S P      SP N Y+L
Sbjct: 364 TSVEDSDGSVRLLSHSGPVYGTTFSPDNKYLL 395


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,694,118
Number of Sequences: 5004
Number of extensions: 31219
Number of successful extensions: 107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)