Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00515
(450 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0999 - 26752410-26752523,26752601-26752830,26752914-267531... 38 0.005
04_04_1062 - 30498158-30498271,30498358-30498518,30498606-304989... 34 0.046
08_01_0871 + 8502396-8502417,8503606-8503732,8503891-8503990,850... 33 0.11
03_03_0001 + 13611070-13611172,13611812-13611873,13612001-136120... 29 1.3
04_04_0464 - 25405629-25405665,25406644-25406710,25408112-254083... 28 3.0
11_01_0307 + 2304500-2306023 27 5.3
04_04_1119 + 31034136-31034385,31035360-31035508 27 5.3
10_08_0054 + 14501357-14502478 27 7.0
10_01_0275 - 2904601-2904900,2905083-2905233,2905522-2905598,290... 27 9.2
04_01_0576 + 7466032-7466802,7468382-7468444,7469043-7469122,746... 27 9.2
>06_03_0999 -
26752410-26752523,26752601-26752830,26752914-26753169,
26753763-26753828,26753921-26754046,26754148-26754288,
26754377-26754387,26754523-26754670,26755326-26755454,
26755573-26755710,26755808-26755876,26755955-26756023,
26756565-26756720,26756885-26756985,26757068-26757215,
26757540-26757702,26757833-26757965,26758049-26758226,
26758330-26758572,26758664-26758732,26759063-26759187,
26759727-26759766,26760756-26760812,26762831-26762935
Length = 1004
Score = 37.5 bits (83), Expect = 0.005
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = +2
Query: 98 QENLSPQNAYILDTISGNIYVWIGKQATANEKSQAMTKAQELLNAKNYP 244
+E L Y+LD S IYVW+G++ E+ +A + A+ELL N P
Sbjct: 333 RELLDSTKCYLLDCGS-EIYVWMGRETPLEERKRAGSAAEELLREVNRP 380
Score = 29.1 bits (62), Expect = 1.7
Identities = 17/60 (28%), Positives = 33/60 (55%)
Frame = +2
Query: 59 GKIKVTPLSKPFKQENLSPQNAYILDTISGNIYVWIGKQATANEKSQAMTKAQELLNAKN 238
GK V PF + +L+ + +ILDT S I+ + G ++ E+++A+ Q L ++ +
Sbjct: 205 GKHTVHVKEVPFARSSLNHDDIFILDTKS-KIFQFNGSNSSIQERAKALEVVQYLKDSNH 263
>04_04_1062 -
30498158-30498271,30498358-30498518,30498606-30498924,
30499412-30499477,30499601-30499726,30499821-30499961,
30500482-30500535,30501508-30501636,30501733-30501870,
30501993-30502061,30502135-30502203,30502468-30502623,
30503795-30503895,30503986-30504136,30504475-30504520,
30504539-30504637,30504796-30504928,30505018-30505195,
30505282-30505524,30505612-30505680,30505986-30506085,
30506898-30507007
Length = 923
Score = 34.3 bits (75), Expect = 0.046
Identities = 14/45 (31%), Positives = 30/45 (66%)
Frame = +2
Query: 92 FKQENLSPQNAYILDTISGNIYVWIGKQATANEKSQAMTKAQELL 226
F Q++L ++ ++LD + +++VW+G++ A +SQAM ++ L
Sbjct: 622 FTQDDLMAEDIFVLDCRT-DLFVWVGQEVDAKLRSQAMDIGEKFL 665
>08_01_0871 +
8502396-8502417,8503606-8503732,8503891-8503990,
8504725-8504793,8504870-8505043,8505196-8505373,
8505462-8505594,8505702-8505864,8507031-8507181,
8507266-8507366,8507633-8507788,8508105-8508173,
8508256-8508324,8508403-8508540,8508639-8508767,
8509013-8509053,8510019-8510106,8510199-8510339,
8510428-8510553,8510671-8510736,8510994-8511291,
8511387-8511595,8511689-8511802
Length = 953
Score = 33.1 bits (72), Expect = 0.11
Identities = 16/49 (32%), Positives = 30/49 (61%)
Frame = +2
Query: 59 GKIKVTPLSKPFKQENLSPQNAYILDTISGNIYVWIGKQATANEKSQAM 205
G +K+ + F Q++L ++ +ILD S +I+VW+G+Q + QA+
Sbjct: 633 GNLKIKEIYH-FTQDDLMTEDVFILDCHS-DIFVWVGQQVDVKVRLQAL 679
>03_03_0001 +
13611070-13611172,13611812-13611873,13612001-13612072,
13612158-13612394,13612473-13612650,13612731-13612863,
13613686-13613845,13613925-13614078,13614159-13614262,
13614354-13614512,13615399-13615467,13615543-13615611,
13615772-13615909,13616044-13616124,13616805-13616933,
13617717-13617864,13618007-13618017,13618094-13618234,
13618314-13618439,13619164-13619220,13619355-13619453,
13619540-13619762,13620236-13620480,13621325-13621438
Length = 1003
Score = 29.5 bits (63), Expect = 1.3
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +2
Query: 59 GKIKVTPLSKPFKQENLSPQNAYILDTISGNIYVWIGKQATANEKSQAMTKAQEL 223
GK + PF + +L+ + +ILDT IY + G + E+++A+ Q L
Sbjct: 150 GKRAIRVKEVPFARSSLNHDDVFILDT-EKKIYQFNGANSNIQERAKALEAIQHL 203
>04_04_0464 -
25405629-25405665,25406644-25406710,25408112-25408373,
25408989-25409198,25409818-25410006,25410087-25410548,
25410889-25410936,25411972-25412301
Length = 534
Score = 28.3 bits (60), Expect = 3.0
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 49 RRHGKDQSDATIEAFQARELESTERVYFGHHIWQHLRLDREAG 177
R H D + E+ + R LE+ ER Y W+ L+ D E+G
Sbjct: 22 RNHEDDDDEEEEESGEGRVLEAWERAYADDRSWEALQED-ESG 63
>11_01_0307 + 2304500-2306023
Length = 507
Score = 27.5 bits (58), Expect = 5.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 127 YFGHHIWQHLRLDREAGYRKREIS 198
Y GH +WQ R R AG ++E++
Sbjct: 464 YVGHRLWQRRRRRRRAGGMEQELT 487
>04_04_1119 + 31034136-31034385,31035360-31035508
Length = 132
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/49 (24%), Positives = 24/49 (48%)
Frame = +3
Query: 228 TLRTILRGCSDQSSTEHGACSIQAVLLHLARLRNVSLASHLKAKSTKQR 374
+L +++RGC D + G ++ L + + + HLK K K++
Sbjct: 74 SLVSVVRGCGDVEMADEGNNKSKSFLKPIGSISKKKVQLHLKIKKDKRK 122
>10_08_0054 + 14501357-14502478
Length = 373
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 114 GLKFSCLKGFDSGVTLIFPVASDTSERI 31
GLK +CL+ DS T++ +ASD E +
Sbjct: 323 GLKEACLRFIDSTATMVAVMASDGFEHL 350
>10_01_0275 -
2904601-2904900,2905083-2905233,2905522-2905598,
2907201-2907390,2908796-2908981,2910521-2910571,
2911476-2911885,2912252-2912509,2912768-2913070
Length = 641
Score = 26.6 bits (56), Expect = 9.2
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = +3
Query: 228 TLRTILRGCSDQSSTEHGACSIQAVLLHLARLRNVSLASHLKAKSTKQRKSAIGLSFLII 407
+L+ + G D++ G+ L L L S +SH A+STK +K + S I
Sbjct: 287 SLKMVWLGVGDEALEAIGSSCSALENLSLDNLNKCSDSSHKPARSTKSKKKLVRESLFSI 346
>04_01_0576 +
7466032-7466802,7468382-7468444,7469043-7469122,
7469505-7469622,7470035-7470067,7470400-7470474,
7470887-7471043,7471142-7471230,7472041-7472294,
7472977-7473148,7473250-7473333,7473626-7473730,
7474055-7474363,7474622-7474756,7476236-7476317,
7476423-7476502,7476622-7476783,7477071-7477138,
7478422-7478502,7478634-7478760,7478816-7478879,
7480808-7480854,7481042-7481335
Length = 1149
Score = 26.6 bits (56), Expect = 9.2
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -3
Query: 226 QQFLSFRHGLRFLVCGSLLPDPNVNVARYGVQNIRVLWTQVL 101
+QF+ ++H +R + CG + P+ +++ VQ V QVL
Sbjct: 622 KQFVDYQHTVRNITCGKCI-SPSNTLSKMVVQTENVRLKQVL 662
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,445,515
Number of Sequences: 37544
Number of extensions: 191197
Number of successful extensions: 524
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -