Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00515
(450 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54820| Best HMM Match : No HMM Matches (HMM E-Value=.) 72 2e-13
SB_19295| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_14143| Best HMM Match : Gelsolin (HMM E-Value=1.1e-07) 34 0.062
SB_4901| Best HMM Match : Gelsolin (HMM E-Value=0.83) 32 0.19
SB_24829| Best HMM Match : Gelsolin (HMM E-Value=5.8e-35) 29 1.8
SB_38328| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029) 27 5.4
SB_16794| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_14633| Best HMM Match : LRR_1 (HMM E-Value=3.4e-12) 27 7.2
SB_10602| Best HMM Match : RVT_1 (HMM E-Value=1.3e-10) 27 7.2
SB_28305| Best HMM Match : MMR_HSR1 (HMM E-Value=0.0054) 27 9.5
SB_9755| Best HMM Match : Sushi (HMM E-Value=0) 27 9.5
SB_9147| Best HMM Match : Sushi (HMM E-Value=0) 27 9.5
>SB_54820| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 313
Score = 72.1 bits (169), Expect = 2e-13
Identities = 33/83 (39%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Frame = +2
Query: 11 RNEASNVILSEVSDATGKIKVTPL-SKPFKQENLSPQNAYILDTISGNIYVWIGKQATAN 187
R A LS +SDA+G++++ + +KP K+ NL + +ILD S ++VW+GK T N
Sbjct: 139 RKPARAPSLSTMSDASGELEMREIEAKPLKKSNLDTNDCFILDCGSSGVFVWVGKGCTKN 198
Query: 188 EKSQAMTKAQELLNAKNYPSWVQ 256
EKS AM + + K YP+W Q
Sbjct: 199 EKSAAMKNGIDFIEKKGYPNWTQ 221
Score = 27.5 bits (58), Expect = 5.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 256 VTRVLQNTEPAAFKQYFFTWRD 321
VTRV++ E FKQ+F W D
Sbjct: 222 VTRVVEGGETPIFKQFFSGWTD 243
>SB_19295| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 297
Score = 39.5 bits (88), Expect = 0.001
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Frame = +2
Query: 5 FERNEASNVILSEVSDATGKIKVTPLS--KPFKQENLSPQNAYILDTISGNIYVWIGKQA 178
+ R A V S +SD TG+++ ++ K K+ L + YI D+ + YV++GK A
Sbjct: 16 YRRRAAGKV--SYLSDRTGQLQCNEIARGKEVKRSLLKEDDVYIFDS-GRHCYVYVGKAA 72
Query: 179 TANEKSQAMTKAQELL 226
+ +E+ AMT A + L
Sbjct: 73 SIDERRNAMTYAHQPL 88
>SB_14143| Best HMM Match : Gelsolin (HMM E-Value=1.1e-07)
Length = 546
Score = 33.9 bits (74), Expect = 0.062
Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Frame = +2
Query: 8 ERNEASNVILSEVSDATGKIKVTPLSKPFKQENLSPQNAYILDTISGNIYVWIGKQATAN 187
+ +EA L + G ++V + F Q++L + +D + +IY+W+G++A +
Sbjct: 321 QSSEAPEPRLFHCYNKRGSLEVEEIVN-FGQDDLVDDDVMFVD-LGDHIYMWVGEEAKKS 378
Query: 188 E--KSQAMTKAQELLNAKNYPSWVQ 256
E ++Q K +E ++ K WV+
Sbjct: 379 EVDETQEFIKVREYVSGKVRVPWVK 403
>SB_4901| Best HMM Match : Gelsolin (HMM E-Value=0.83)
Length = 60
Score = 32.3 bits (70), Expect = 0.19
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +2
Query: 125 YILDTISGNIYVWIGKQATANEKSQAMTKAQELLNAKNYP 244
++ DT + YVW+G A+ +E+ +AMT A L ++P
Sbjct: 2 FLFDT-GCHCYVWVGAGASIDERGKAMTYAHNYLGQTDHP 40
>SB_24829| Best HMM Match : Gelsolin (HMM E-Value=5.8e-35)
Length = 1078
Score = 29.1 bits (62), Expect = 1.8
Identities = 15/47 (31%), Positives = 28/47 (59%)
Frame = +2
Query: 98 QENLSPQNAYILDTISGNIYVWIGKQATANEKSQAMTKAQELLNAKN 238
+ +L ++ +ILD N+Y+W+G + +EK + M QE+L K+
Sbjct: 618 RSSLCSEDVFILDK-GLNLYLWVGVKCDKDEKFRGM---QEILKIKS 660
Score = 26.6 bits (56), Expect = 9.5
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 134 DTISGNIYVWIGKQATANEKSQAMTKAQEL 223
D + +++ WIGK +T +E A K EL
Sbjct: 517 DELKYDVHFWIGKDSTQDEYGTAAYKTVEL 546
Score = 26.6 bits (56), Expect = 9.5
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 134 DTISGNIYVWIGKQATANEKSQAMTKAQEL 223
D + +++ WIGK +T +E A K EL
Sbjct: 906 DELKYDVHFWIGKDSTQDEYGTAAYKTVEL 935
>SB_38328| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 267
Score = 28.3 bits (60), Expect = 3.1
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 80 LSKPFKQENLSPQNAYILDTISGNIYVWIGKQATANEKSQAMTKA 214
+ +PF+Q NL P N I Y +I + T ++Q++ A
Sbjct: 139 MKRPFRQPNLQPNNGLITGDPRAMTYNYIQPKYTTYNQAQSVAAA 183
>SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029)
Length = 1866
Score = 27.5 bits (58), Expect = 5.4
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +2
Query: 56 TGKIKV-TPLSKPFKQENLSPQNAYILDTISGNIYVWIGKQATANEKSQAMTKAQELLNA 232
TG+ + T L +P Q++ + + Y+L T ++ W+GK A A E+++ A +
Sbjct: 1456 TGRRNIQTRLIEPC-QKSFNSGDCYVLVT-KDELFAWVGKHANAIERAKVTEIASRIFTK 1513
Query: 233 K 235
+
Sbjct: 1514 R 1514
>SB_16794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1407
Score = 27.1 bits (57), Expect = 7.2
Identities = 17/69 (24%), Positives = 31/69 (44%)
Frame = +1
Query: 169 EAGYRKREISGHDESSGIVER*ELSFVGAVTRVLQNTEPAAFKQYFFTWRDFGMSHSRVI 348
EA K E + H + +++ + F G R+++ EP K + GM+ VI
Sbjct: 717 EAKSNKHESARHQKKKEVLDSMKRLFPGVHGRLIELCEPTHKKYNLAVTKVLGMNMDAVI 776
Query: 349 *KLKAQNKE 375
+K N++
Sbjct: 777 VDIKPVNEQ 785
>SB_14633| Best HMM Match : LRR_1 (HMM E-Value=3.4e-12)
Length = 446
Score = 27.1 bits (57), Expect = 7.2
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 134 DTISGNIYVWIGKQATANEKSQAMTKAQELLN 229
D + IY WIGK+A+ E+ + EL +
Sbjct: 268 DQLFWQIYYWIGKEASREEQGDESEEFHELFD 299
>SB_10602| Best HMM Match : RVT_1 (HMM E-Value=1.3e-10)
Length = 416
Score = 27.1 bits (57), Expect = 7.2
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +1
Query: 46 VRRHGKDQSDATIEAFQARELESTERVYFGHHIWQHLRLDREAGYRKREIS 198
V+R Q I +++ + VY G I + R+D E +RKR+ S
Sbjct: 334 VKRQTLTQFPGEIHVRNETLVQTKDFVYLGSTISDNARIDNEITFRKRKAS 384
>SB_28305| Best HMM Match : MMR_HSR1 (HMM E-Value=0.0054)
Length = 425
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +3
Query: 291 IQAVLLHLARLRNVSLASHLKAKSTKQRKSAIGLSFLII 407
+ A++L+ RLR +S A+ L + ++ A L FL++
Sbjct: 85 LAAIILYFRRLRRMSKATSLWSHGASSKEPAKELRFLVL 123
>SB_9755| Best HMM Match : Sushi (HMM E-Value=0)
Length = 1351
Score = 26.6 bits (56), Expect = 9.5
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -1
Query: 192 FSFAVACFPIQT*MLPDMVSKIYAFCGL-KFSCLKGFD 82
F AV C P+ M V + F + KFSC +GFD
Sbjct: 625 FCHAVDCGPLAAPMNGSSVGNLTVFPNIIKFSCDEGFD 662
>SB_9147| Best HMM Match : Sushi (HMM E-Value=0)
Length = 1656
Score = 26.6 bits (56), Expect = 9.5
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -1
Query: 192 FSFAVACFPIQT*MLPDMVSKIYAFCGL-KFSCLKGFD 82
F AV C P+ M V + F + KFSC +GFD
Sbjct: 56 FCHAVDCGPLAAPMNGSSVGNLTVFPNIIKFSCDEGFD 93
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,261,904
Number of Sequences: 59808
Number of extensions: 221529
Number of successful extensions: 614
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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