Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00515
(450 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70755-3|CAA94782.1| 475|Caenorhabditis elegans Hypothetical pr... 68 4e-12
U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I ho... 31 0.39
L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophi... 31 0.39
U41624-4|AAF99945.1| 322|Caenorhabditis elegans Hypothetical pr... 27 4.8
Z81557-8|CAD90179.1| 353|Caenorhabditis elegans Hypothetical pr... 27 8.3
Z72510-3|CAA96653.1| 366|Caenorhabditis elegans Hypothetical pr... 27 8.3
U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical pr... 27 8.3
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 27 8.3
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated... 27 8.3
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 27 8.3
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 27 8.3
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 27 8.3
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 27 8.3
>Z70755-3|CAA94782.1| 475|Caenorhabditis elegans Hypothetical
protein K06A4.3 protein.
Length = 475
Score = 67.7 bits (158), Expect = 4e-12
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 2/78 (2%)
Frame = +2
Query: 29 VILSEVSDATGKIKVTPLSKP--FKQENLSPQNAYILDTISGNIYVWIGKQATANEKSQA 202
+ L +VSDA+G KV+ +S+ ++E L P++A+ILD I+G I+VWIG + T E+S+A
Sbjct: 251 ITLWKVSDASGAAKVSMVSQGENIRKEQLDPKDAFILDAINGGIFVWIGHECTLEERSKA 310
Query: 203 MTKAQELLNAKNYPSWVQ 256
+ Q L + P W Q
Sbjct: 311 LIWGQNYLKQHHLPRWTQ 328
Score = 51.6 bits (118), Expect = 3e-07
Identities = 27/71 (38%), Positives = 42/71 (59%)
Frame = +2
Query: 32 ILSEVSDATGKIKVTPLSKPFKQENLSPQNAYILDTISGNIYVWIGKQATANEKSQAMTK 211
+L +VSD +G + V ++ F QE+L + ILD ++ +IYVW+G A ANEK +A+
Sbjct: 360 LLFQVSDESGLLHVEEIAN-FTQEDLDGDDVMILDALN-SIYVWVGANANANEKKEALNT 417
Query: 212 AQELLNAKNYP 244
A+ L P
Sbjct: 418 AKLYLEKDKLP 428
Score = 26.6 bits (56), Expect = 8.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 256 VTRVLQNTEPAAFKQYFFTWRD 321
VTRVL++ E F Q+F W D
Sbjct: 329 VTRVLESAESTQFTQWFRDWVD 350
Score = 26.6 bits (56), Expect = 8.3
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 253 AVTRVLQNTEPAAFKQYFFTWRD 321
A+ + Q EP FK++F +W D
Sbjct: 434 AIDTIFQGKEPPTFKKFFPSWDD 456
>U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I
homolog protein.
Length = 1257
Score = 31.1 bits (67), Expect = 0.39
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +2
Query: 95 KQENLSPQNAYILDTISGNIYVWIGKQATANEKSQAMTKAQELLNAKNYPSWVQ 256
KQ+ L + ++LD+ S +I++WIGK+A K EL + P + Q
Sbjct: 766 KQDMLGSKGVFVLDSNS-DIFLWIGKKANRLLKMAGQKLVVELHQMIDRPDYAQ 818
>L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophila
flightless) homologprotein 1 protein.
Length = 1257
Score = 31.1 bits (67), Expect = 0.39
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +2
Query: 95 KQENLSPQNAYILDTISGNIYVWIGKQATANEKSQAMTKAQELLNAKNYPSWVQ 256
KQ+ L + ++LD+ S +I++WIGK+A K EL + P + Q
Sbjct: 766 KQDMLGSKGVFVLDSNS-DIFLWIGKKANRLLKMAGQKLVVELHQMIDRPDYAQ 818
>U41624-4|AAF99945.1| 322|Caenorhabditis elegans Hypothetical
protein F46C8.7 protein.
Length = 322
Score = 27.5 bits (58), Expect = 4.8
Identities = 9/25 (36%), Positives = 21/25 (84%)
Frame = +2
Query: 77 PLSKPFKQENLSPQNAYILDTISGN 151
PL+ PF + +L+P++A +++++SG+
Sbjct: 278 PLACPFARMSLTPKDARVIESLSGS 302
>Z81557-8|CAD90179.1| 353|Caenorhabditis elegans Hypothetical
protein F59A1.14 protein.
Length = 353
Score = 26.6 bits (56), Expect = 8.3
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -1
Query: 168 PIQT*MLPDMVSKIYAFCGLKFSCLKGFDSGVTLIFPVASDTS 40
P ++P KIY LKF C +D+ V + +A D S
Sbjct: 297 PFMDALVPMYFIKIYRMAILKFFCRSKYDTRVHGVLSLAMDNS 339
>Z72510-3|CAA96653.1| 366|Caenorhabditis elegans Hypothetical
protein F53B7.4 protein.
Length = 366
Score = 26.6 bits (56), Expect = 8.3
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 277 CSVELWSLHPRRIVLSVQQFLSFRH 203
C +E+ SL+ I++S+ FL F H
Sbjct: 50 CEIEIQSLNGNLILVSITNFLMFSH 74
>U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical protein
F46H5.4 protein.
Length = 2018
Score = 26.6 bits (56), Expect = 8.3
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +2
Query: 14 NEASNVILSEVSDATGKIKVTPL--SKPFKQENLSPQNAYI 130
NE SN + + ++ G+ V L SKP + E L+P+ AYI
Sbjct: 1761 NEISNRLETFYTNMYGEGNVVVLKDSKPVQLEKLNPEKAYI 1801
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 26.6 bits (56), Expect = 8.3
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +2
Query: 35 LSEVSDATGKIKVTPLSKPFKQENLSPQNAYILDTISGNIYV 160
++E S + G +K P++KP Q +++P N DT+ + +
Sbjct: 2545 VAECSASLGVVKGRPMAKPAFQSDIAPINLTEGDTLECKLLI 2586
>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
protein 89, isoform e protein.
Length = 5992
Score = 26.6 bits (56), Expect = 8.3
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +2
Query: 35 LSEVSDATGKIKVTPLSKPFKQENLSPQNAYILDTISGNIYV 160
++E S + G +K P++KP Q +++P N DT+ + +
Sbjct: 1905 VAECSASLGVVKGRPMAKPAFQSDIAPINLTEGDTLECKLLI 1946
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 26.6 bits (56), Expect = 8.3
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +2
Query: 35 LSEVSDATGKIKVTPLSKPFKQENLSPQNAYILDTISGNIYV 160
++E S + G +K P++KP Q +++P N DT+ + +
Sbjct: 2545 VAECSASLGVVKGRPMAKPAFQSDIAPINLTEGDTLECKLLI 2586
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 26.6 bits (56), Expect = 8.3
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +2
Query: 35 LSEVSDATGKIKVTPLSKPFKQENLSPQNAYILDTISGNIYV 160
++E S + G +K P++KP Q +++P N DT+ + +
Sbjct: 2545 VAECSASLGVVKGRPMAKPAFQSDIAPINLTEGDTLECKLLI 2586
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 26.6 bits (56), Expect = 8.3
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +2
Query: 35 LSEVSDATGKIKVTPLSKPFKQENLSPQNAYILDTISGNIYV 160
++E S + G +K P++KP Q +++P N DT+ + +
Sbjct: 1905 VAECSASLGVVKGRPMAKPAFQSDIAPINLTEGDTLECKLLI 1946
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 26.6 bits (56), Expect = 8.3
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +2
Query: 35 LSEVSDATGKIKVTPLSKPFKQENLSPQNAYILDTISGNIYV 160
++E S + G +K P++KP Q +++P N DT+ + +
Sbjct: 2545 VAECSASLGVVKGRPMAKPAFQSDIAPINLTEGDTLECKLLI 2586
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,138,701
Number of Sequences: 27780
Number of extensions: 166261
Number of successful extensions: 484
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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