Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00515
         (450 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    24   0.88 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   4.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   4.7  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   8.2  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.8 bits (49), Expect = 0.88
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -2

Query: 269 RTLVTAPTKDSS*RSTIPELSSWPEISRLR 180
           R  V+  T+DSS + TI  LSS  +I+R R
Sbjct: 84  RKEVSIITEDSSRKQTIDPLSSNTQITRKR 113


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 245 SWVQ*PEFYRTRSLQ 289
           SW+Q P FY   SLQ
Sbjct: 166 SWLQEPSFYIYPSLQ 180


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 245 SWVQ*PEFYRTRSLQ 289
           SW+Q P FY   SLQ
Sbjct: 166 SWLQEPSFYIYPSLQ 180


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 84  DSGVTLIFPVASDTSERITLLASFL 10
           +S   L+F V S++ E++TL  S L
Sbjct: 228 NSVALLVFYVPSESGEKVTLGISAL 252


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,451
Number of Sequences: 438
Number of extensions: 2002
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)