Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00514
         (794 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||...    27   3.1  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   3.1  
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    27   3.1  
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    26   7.1  
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p...    25   9.4  

>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +1

Query: 85  DYDTNEDLLYAYSPIPYFGMYHLVKIPIDRGLVHHVDYWG 204
           ++ T ++ + A+ P+ Y G + L  +P D+  +H+ D  G
Sbjct: 311 EFGTWDNGIKAFIPMEYVGTHLLDGVPPDKSCIHNYDNAG 350


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
 Frame = +1

Query: 277 SSVRATTRESKYPTGSPSCLWT--TATLPVTSETTASKLLPSARGRSLSGALQTSPGLST 450
           +S   TT  S  PTG  S L T  T T+P TS ++ S  +P     S        P  ST
Sbjct: 168 TSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTST 227



 Score = 26.2 bits (55), Expect = 5.4
 Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
 Frame = +1

Query: 262 TNS--LRSSVRATTRESKYPTGSPSCLWT--TATLPVTSETTASKLLPSARGRSLSGALQ 429
           TNS  L ++  + T  +  PTG  S L T  T T+P TS ++ S  +P     S      
Sbjct: 217 TNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSS 276

Query: 430 TSPGLSTRPKLVVAYGYSENSDDIQNPSV 516
             P  ST      +   + NS     P+V
Sbjct: 277 PLPTTSTSCTTSTSIPPTGNSTTPVTPTV 305


>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 673

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +1

Query: 85  DYDTNEDLLYAYSPIPYFGMYHLVKIPIDRGLVHHVDYWG 204
           ++ T ++ + A+ P+ Y G + L  +P D+  +H+ D  G
Sbjct: 311 EFGTWDNGIKAFIPMEYVGTHLLDGVPPDKSCIHNYDNAG 350


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 173 LSIGIFTRWYIPK*GIGEYAYNR 105
           LSI  F +WY+    I E+ Y R
Sbjct: 13  LSISFFLQWYLANTWIAEFLYRR 35


>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
 Frame = +1

Query: 436 PGLSTRPKLVVAYGYSENSDDIQNPSVSWQKRLILWSR---VRTARRLEDPDGIQHEDGL 606
           P    RP + +  GY+E +   + PS+  ++    +++   + + R L   DGI    GL
Sbjct: 13  PVCGLRPSITLKRGYAEKAAPTEVPSILEERIRGAYNQAQMMESGRVLSIGDGIARISGL 72

Query: 607 CRRNVNQQPLVXLGYG 654
              NV  + LV    G
Sbjct: 73  --SNVQAEELVEFSSG 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,918,406
Number of Sequences: 5004
Number of extensions: 57411
Number of successful extensions: 132
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)