Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00514
(794 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0302 - 22144271-22144543,22144946-22145083,22146004-221462... 31 1.1
06_03_1070 - 27351781-27351882,27352461-27352520,27353033-273531... 30 2.4
06_03_0105 + 16693771-16693780,16693833-16693876,16694274-166943... 30 2.4
03_02_0127 + 5777564-5779879 29 3.2
09_04_0223 - 15837275-15838279 29 4.3
02_05_1113 + 34207997-34208380 29 5.6
06_03_1056 + 27239176-27242361 28 7.4
08_01_0661 - 5708088-5708131,5708217-5710048,5710527-5710625,571... 28 9.8
02_03_0390 + 18448671-18448889,18449567-18449632,18449702-184497... 28 9.8
>09_06_0302 -
22144271-22144543,22144946-22145083,22146004-22146278,
22146486-22146957
Length = 385
Score = 31.1 bits (67), Expect = 1.1
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 1/97 (1%)
Frame = +1
Query: 301 ESKYPTGSPSCL-WTTATLPVTSETTASKLLPSARGRSLSGALQTSPGLSTRPKLVVAYG 477
E P+G+ + L + PV+ T S S RG G ++P + LVV YG
Sbjct: 260 ECLVPSGNETALKLAVLSQPVSVVITISDEFRSYRGGVFRGPCGSNPNVDNHVVLVVGYG 319
Query: 478 YSENSDDIQNPSVSWQKRLILWSRVRTARRLEDPDGI 588
+ ++ SW K + +R R + + +GI
Sbjct: 320 VTTDNIKYWIIKNSWGKTWGEYGYIRMERDILNKNGI 356
>06_03_1070 -
27351781-27351882,27352461-27352520,27353033-27353142,
27353583-27353693,27353781-27353939,27354035-27354158,
27354755-27354812,27356656-27356933
Length = 333
Score = 29.9 bits (64), Expect = 2.4
Identities = 21/70 (30%), Positives = 32/70 (45%)
Frame = +1
Query: 313 PTGSPSCLWTTATLPVTSETTASKLLPSARGRSLSGALQTSPGLSTRPKLVVAYGYSENS 492
P G C+ + T PV T AS ++PS S++ L S R + A + S
Sbjct: 164 PLGEQGCVMSMDTSPVIRNTNASAVVPS-WDNSIAQPLSAS-----RTQGTGAVATNNCS 217
Query: 493 DDIQNPSVSW 522
I++PS +W
Sbjct: 218 SSIESPSTTW 227
>06_03_0105 +
16693771-16693780,16693833-16693876,16694274-16694348,
16694548-16694784,16694880-16695050,16695137-16695250
Length = 216
Score = 29.9 bits (64), Expect = 2.4
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3
Query: 360 NWKCRCRPQTRRGSCWVF 307
N+ CRCRP+ RR W +
Sbjct: 5 NYVCRCRPENRRNKGWAY 22
>03_02_0127 + 5777564-5779879
Length = 771
Score = 29.5 bits (63), Expect = 3.2
Identities = 22/76 (28%), Positives = 37/76 (48%)
Frame = +1
Query: 307 KYPTGSPSCLWTTATLPVTSETTASKLLPSARGRSLSGALQTSPGLSTRPKLVVAYGYSE 486
K PT P+ L +PV S+ + S LL S R++ G L +SP T + +
Sbjct: 210 KRPTSLPTKLNLIKQVPVPSQVS-SHLLSSKAKRTVKGELTSSPATVTGVRRSNSDKTGR 268
Query: 487 NSDDIQNPSVSWQKRL 534
+S + PS++ ++ L
Sbjct: 269 SSMNSSKPSINGKEGL 284
>09_04_0223 - 15837275-15838279
Length = 334
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -2
Query: 775 RTTWLLDALRDEPRDDVATDVGALVVDETAHSLH 674
R L+D LR +PRDDV G V D+ +H
Sbjct: 199 RVAALVDELRHKPRDDVYLGYGFAVGDDPMQFMH 232
>02_05_1113 + 34207997-34208380
Length = 127
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +1
Query: 541 WSRVRTARRLEDPDGIQHEDGLCRRNVNQQP 633
W R RTARR DG E+G C R + P
Sbjct: 45 WRRSRTARRTPVADGDGSEEGGCGRGRRRGP 75
>06_03_1056 + 27239176-27242361
Length = 1061
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 198 VIDMVYQPSVDRDLHEVVHTEVGYW 124
V D + S+DR LH HTE G W
Sbjct: 814 VFDFMPNYSLDRWLHRAKHTETGKW 838
>08_01_0661 -
5708088-5708131,5708217-5710048,5710527-5710625,
5711015-5711508,5711579-5711632,5712597-5712683,
5712684-5712776
Length = 900
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -3
Query: 273 QTVRSHLAPREASYLVKVSHF--SFSPVIDMVYQPSVDRDLHEVVHTE 136
+++ S+L P A Y + F +PV++MV Q +V+ V H E
Sbjct: 366 RSIVSNLCPFSAMYSASFAQFLAGRNPVLNMVQQATVEEKFLSVFHNE 413
>02_03_0390 + 18448671-18448889,18449567-18449632,18449702-18449761,
18449864-18449959,18452287-18452447,18452669-18452790,
18452872-18453239,18453653-18453739,18453835-18453969,
18454349-18454471,18454771-18454854,18455023-18455187,
18455310-18455486,18455660-18455773,18455912-18456016,
18457056-18457174,18457244-18457385,18457461-18457555,
18457757-18457862,18458125-18458204,18458285-18458461,
18459828-18459912,18460024-18460104,18460208-18460351,
18460468-18460563,18460654-18460854,18461462-18461895,
18462417-18462478,18462622-18462872,18462956-18463030,
18463110-18463300,18463696-18463867,18463956-18464020,
18464646-18464778,18464861-18464962,18465047-18465130,
18465656-18465730,18465818-18465877,18465967-18466223,
18466560-18466608,18466781-18466941,18467013-18467079,
18467174-18467299,18467422-18467592,18468566-18468769,
18469059-18469165,18469608-18469737,18469774-18469959,
18470704-18470742
Length = 2202
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = -3
Query: 345 CRPQTRRGSCWVFAFPRCG-PY*RAQ 271
CR T +G W A P+CG PY R Q
Sbjct: 2096 CRDSTLQGQEWRCAVPQCGQPYHREQ 2121
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,096,249
Number of Sequences: 37544
Number of extensions: 413058
Number of successful extensions: 989
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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