Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00514
         (794 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11854| Best HMM Match : Neuromodulin (HMM E-Value=7.3)              32   0.62 
SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.9  
SB_5064| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.5  
SB_13438| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-24)                 29   3.3  
SB_10730| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-24)                 29   3.3  
SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_27401| Best HMM Match : SCP (HMM E-Value=9e-23)                     29   5.7  
SB_34069| Best HMM Match : ARID (HMM E-Value=4.8e-14)                  28   7.6  

>SB_11854| Best HMM Match : Neuromodulin (HMM E-Value=7.3)
          Length = 531

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 28/112 (25%), Positives = 46/112 (41%)
 Frame = +1

Query: 262 TNSLRSSVRATTRESKYPTGSPSCLWTTATLPVTSETTASKLLPSARGRSLSGALQTSPG 441
           T +  ++   TT  +   T +P    TT T P T+    +   P+    + S    T+  
Sbjct: 27  TTAPTTNTALTTTTAPTTTTAP----TTTTAPTTTTAPTTTTTPN-NDYNTSDDYSTNND 81

Query: 442 LSTRPKLVVAYGYSENSDDIQNPSVSWQKRLILWSRVRTARRLEDPDGIQHE 597
            ST      +  YS N D      +  Q+RL    R++  RRL+    +QH+
Sbjct: 82  YSTNNDYSTSDEYSTNDDYNTKQRLQHQRRLQHQQRLQHQRRLQHQRRLQHK 133


>SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2248

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = +1

Query: 313  PTGSPSCLWTTATLPVTSETTASKLLPSAR--GRSLSGALQTSPGLSTRPKLVVAYGYSE 486
            P G P      +    +SETT  KLLP  +  G S    L+ +P ++  P+L      SE
Sbjct: 1511 PEGKPGSPGQPSRQSASSETTNEKLLPGKQSPGASSDTELKGTPSVTNTPQLQGTSSASE 1570

Query: 487  NSDDIQN 507
            ++   Q+
Sbjct: 1571 STQTQQS 1577


>SB_5064| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 711

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +1

Query: 349 TLPVTSETTASKLLPSARGRSLSGALQTSPGLSTRPKLVVAYGYSENSDDIQNP 510
           T P+T   T     P + GRS SGA+++S   S   K V A  +  +S     P
Sbjct: 295 TNPLTLRNTVDSSSPVSGGRSYSGAIKSSLSSSVNSKPVEATSHVADSKGNSKP 348


>SB_13438| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-24)
          Length = 672

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/58 (24%), Positives = 31/58 (53%)
 Frame = -3

Query: 279 RAQTVRSHLAPREASYLVKVSHFSFSPVIDMVYQPSVDRDLHEVVHTEVGYWGVRIQQ 106
           +A  + +H++ R  + +  +SH +  PVI  V+  +  +   ++ HT +   G+R Q+
Sbjct: 269 KATGLGAHMSIRHVNNIFMISHGALHPVIYFVFNENFRKKFRQLTHTWLTR-GIRFQR 325


>SB_10730| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-24)
          Length = 654

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/58 (24%), Positives = 31/58 (53%)
 Frame = -3

Query: 279 RAQTVRSHLAPREASYLVKVSHFSFSPVIDMVYQPSVDRDLHEVVHTEVGYWGVRIQQ 106
           +A  + +H++ R  + +  +SH +  PVI  V+  +  +   ++ HT +   G+R Q+
Sbjct: 254 KATGLGAHMSIRHVNNIFMISHGALHPVIYFVFNENFRKKFRQLTHTWLTR-GIRFQR 310


>SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1141

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +1

Query: 277 SSVRATTRESKYPTGSPSCLWTTATLPVTS-ETTASKLLPSARGRSLSGALQTSPGLSTR 453
           S  R  T  +   T +P    TTA+L  T+ ETT + L  +A   + +  L T+P  +T 
Sbjct: 48  SEKRKKTTTASLATTAPET--TTASLVTTAPETTTASLATTAPETTTASFLTTAPEATTA 105

Query: 454 PKLVVA 471
           P+   A
Sbjct: 106 PETTTA 111


>SB_27401| Best HMM Match : SCP (HMM E-Value=9e-23)
          Length = 1105

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +1

Query: 286 RATTRESKYPTGSPSCLWTTATLPVTSETTASKLLPSARGRSLSGALQTSPGLSTRPK 459
           +ATT  +   T +P  + T    P+TS  T++  +   R         ++ G STR K
Sbjct: 380 QATTTAATTSTAAPGNITTPTKGPITSNNTSTPTMSGGRKMPAKEPTTSTTGHSTRSK 437


>SB_34069| Best HMM Match : ARID (HMM E-Value=4.8e-14)
          Length = 1774

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
 Frame = +1

Query: 262  TNSLRSSVRATTRESKYPTGSPSCLWTTATLPVTSETTASKLLPSARGRSLSGAL--QTS 435
            +NS ++S  ATTR++  PT   S    +   P T+ +T  +   +A+  +++G++  +TS
Sbjct: 944  SNSTQNSTEATTRKTGTPTSKTSYSKQSRAEPSTTYSTCQQ-ASTAQASAINGSITSKTS 1002

Query: 436  PG 441
             G
Sbjct: 1003 TG 1004


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,949,047
Number of Sequences: 59808
Number of extensions: 459350
Number of successful extensions: 1172
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1170
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)