Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00514
         (794 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81460-2|CAB03831.1|  439|Caenorhabditis elegans Hypothetical pr...    30   2.2  
AL132904-6|CAD91706.2|  326|Caenorhabditis elegans Hypothetical ...    29   2.9  
AC024791-4|AAK95890.1| 1186|Caenorhabditis elegans Msh (muts hom...    29   2.9  
Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical pr...    28   6.7  

>Z81460-2|CAB03831.1|  439|Caenorhabditis elegans Hypothetical
           protein C04A11.2 protein.
          Length = 439

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/45 (37%), Positives = 29/45 (64%)
 Frame = +1

Query: 268 SLRSSVRATTRESKYPTGSPSCLWTTATLPVTSETTASKLLPSAR 402
           S R+S RA +  ++ PTG+P+   T    PVT+ T++S + P+A+
Sbjct: 169 SARTSTRAASG-NRTPTGTPNM--TRNVRPVTNRTSSSNVSPAAQ 210


>AL132904-6|CAD91706.2|  326|Caenorhabditis elegans Hypothetical
           protein Y111B2A.9b protein.
          Length = 326

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +3

Query: 117 VLPNTLLRYVPPREDPDRQRAGTPCRLL 200
           V P+ L+   PP  DP  QR+GTP  LL
Sbjct: 4   VSPSNLVFPPPPSPDPYTQRSGTPSALL 31


>AC024791-4|AAK95890.1| 1186|Caenorhabditis elegans Msh (muts
           homolog) family protein 6 protein.
          Length = 1186

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +1

Query: 355 PVTSETTASKLLPSARGRSLSGALQTSPGLSTRPKLVVAYGYSENSDD 498
           P  S  +  K+L  +  +++S  ++T    S RPK+VV    SE  DD
Sbjct: 41  PKISNDSEKKVLKRSNSKTVSSPVKTPRNASKRPKVVVC-SSSEGEDD 87


>Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical
           protein C30H6.11 protein.
          Length = 460

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 17/66 (25%), Positives = 27/66 (40%)
 Frame = +1

Query: 262 TNSLRSSVRATTRESKYPTGSPSCLWTTATLPVTSETTASKLLPSARGRSLSGALQTSPG 441
           T +  ++   TT +    T +P+   TT T P T+ TTA     +      +    T   
Sbjct: 255 TTTTPTTTTQTTTKPTTTTTTPTTTPTTTTTPTTTTTTAKTTKSTTTTTKTTKTTSTPTT 314

Query: 442 LSTRPK 459
            +T PK
Sbjct: 315 TTTTPK 320


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,454,633
Number of Sequences: 27780
Number of extensions: 333508
Number of successful extensions: 816
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)