Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00514
         (794 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g19680.1 68414.m02453 expressed protein                             29   4.7  
At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding ...    28   8.2  
At1g10830.1 68414.m01244 sodium symporter-related contains five ...    28   8.2  

>At1g19680.1 68414.m02453 expressed protein
          Length = 444

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 120 LPNTLLRYVPPREDPDRQRAGTPCRLLGRRKSD 218
           LP+     +PPR  P R+  G+P + L R+ SD
Sbjct: 148 LPSAHTHSLPPRSTPSRRARGSPGQQLFRQVSD 180


>At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding
            bromodomain-containing protein low similarity to
            SP|P51123 Transcription initiation factor TFIID 230 kDa
            subunit {Drosophila melanogaster}; contains Pfam
            profiles: PF00439 bromodomain, PF00240: Ubiquitin family
          Length = 1700

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 2/113 (1%)
 Frame = +1

Query: 193  DYWGEGKVTNLDKIRGFPRS*M*TNSLRSSVRATTRESKYPTGSPSCLWTTATLPVTSET 372
            D  GE  +T +D  +  P+S     + + SV   T+     + +P      A   + S T
Sbjct: 1250 DLSGEVWLTPIDNKKPAPKS-----ATKISVNEATKVGDSTSKTPGSSDVAAVSEIDSGT 1304

Query: 373  --TASKLLPSARGRSLSGALQTSPGLSTRPKLVVAYGYSENSDDIQNPSVSWQ 525
              T+ KL  S++ +  +  +++    S    L+ AY       ++ NPSVS Q
Sbjct: 1305 KLTSRKLKISSKAKPKASKVESD---SPFHSLMPAYSRERGESELHNPSVSGQ 1354


>At1g10830.1 68414.m01244 sodium symporter-related contains five
           transmembrane domains; Interpro IPR001991
           Sodium:dicarboxylate symporter; EST gb|F13926 comes from
           this gene
          Length = 367

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -3

Query: 645 KXYKWLLIDVASAKTIFVLNAVWVFKSAG 559
           K   W+   V     +F+LN VW+  S G
Sbjct: 92  KLVSWVYFGVVLGVVLFILNVVWIDNSTG 120


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,672,016
Number of Sequences: 28952
Number of extensions: 316057
Number of successful extensions: 836
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)