Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00512
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...   109   3e-25
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy...   106   3e-24
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|...   105   5e-24
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    30   0.40 
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces...    29   0.69 
SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces pom...    28   1.6  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   2.1  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   4.9  
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate...    26   6.4  

>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score =  109 bits (263), Expect = 3e-25
 Identities = 48/84 (57%), Positives = 66/84 (78%)
 Frame = +1

Query: 259 EVRKVLXLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLS 438
           ++RKVL L RL +INN VFVR NKA   MLRI EPY+ +G PNL SVREL+YKRGF K++
Sbjct: 104 KIRKVLRLLRLSRINNAVFVRNNKAVAQMLRIVEPYVMYGIPNLHSVRELIYKRGFGKIN 163

Query: 439 GQRIPITSNSIVEKRLHKHNIICV 510
           GQRI ++ N+++E+ L K+++I +
Sbjct: 164 GQRIALSDNALIEEALGKYDVISI 187



 Score = 70.1 bits (164), Expect = 3e-13
 Identities = 29/69 (42%), Positives = 47/69 (68%)
 Frame = +3

Query: 48  LQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFV 227
           ++  + ++ +  K ++E FKRAE ++  YR +ER+ IRL R A+N+G+ +VP E KL FV
Sbjct: 33  VEQAIAKKEAQKKNRKETFKRAETFINNYRQRERERIRLNRSAKNKGDIFVPDETKLLFV 92

Query: 228 IRIRGINQL 254
           IRI G+  +
Sbjct: 93  IRIAGVKNM 101



 Score = 52.4 bits (120), Expect = 6e-08
 Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
 Frame = +3

Query: 510 EDLIHEIFTVGEKFKYASNFLWPFKLNNPTGG-WRKKTIHYVDGGDFGNREDKINDLLRR 686
           ED+IHEI+ VG  FK  + FLWPF L         KK  H+ +G   G   ++IN+L+++
Sbjct: 188 EDIIHEIYNVGSHFKEVTKFLWPFTLTPVKHSLMEKKVKHFNEGRKAGYCGEEINELIKK 247

Query: 687 MV 692
            V
Sbjct: 248 QV 249


>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score =  106 bits (255), Expect = 3e-24
 Identities = 46/84 (54%), Positives = 66/84 (78%)
 Frame = +1

Query: 259 EVRKVLXLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLS 438
           + RK++ L RL QINNGVFV+ NKAT  ML++ EPY+ +G PNLK+VREL+YKRGF K++
Sbjct: 106 KARKIMQLLRLIQINNGVFVKFNKATKEMLQVVEPYVTYGIPNLKTVRELLYKRGFGKVN 165

Query: 439 GQRIPITSNSIVEKRLHKHNIICV 510
            QRI ++ N+I+E  L K++I+ +
Sbjct: 166 KQRIALSDNAIIEAALGKYSILSI 189



 Score = 89.4 bits (212), Expect = 5e-19
 Identities = 36/62 (58%), Positives = 51/62 (82%), Gaps = 1/62 (1%)
 Frame = +3

Query: 510 EDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWR-KKTIHYVDGGDFGNREDKINDLLRR 686
           EDLIHEI+TVG  FK A+NF+WPF+L++P GGWR +K  H+++GGD G R++ IN L+R+
Sbjct: 190 EDLIHEIYTVGPNFKQAANFIWPFQLSSPLGGWRDRKFKHFIEGGDAGKRDEHINSLVRK 249

Query: 687 MV 692
           M+
Sbjct: 250 ML 251



 Score = 77.4 bits (182), Expect = 2e-15
 Identities = 38/63 (60%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
 Frame = +3

Query: 69  RSSAIKKKREIF-KRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGI 245
           + +A +KKRE+  KRAE Y  EYR  ER++I L R+AR  GNYYVP E KL FVIRIRGI
Sbjct: 41  KKAAQQKKRELIAKRAESYDAEYRKAEREQIELGRKARAEGNYYVPDETKLVFVIRIRGI 100

Query: 246 NQL 254
           N +
Sbjct: 101 NNI 103


>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score =  105 bits (253), Expect = 5e-24
 Identities = 45/84 (53%), Positives = 65/84 (77%)
 Frame = +1

Query: 259 EVRKVLXLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLS 438
           + RK++ L RL QINNG+FV+ NKA   ML++ EPY+ +G PN K+VREL+YKRGF K++
Sbjct: 105 KARKIMQLLRLLQINNGIFVKFNKAIKEMLQVVEPYVTYGIPNHKTVRELIYKRGFGKVN 164

Query: 439 GQRIPITSNSIVEKRLHKHNIICV 510
            QRIP++ N+I+E  L K++I+ V
Sbjct: 165 KQRIPLSDNAIIEAALGKYSILSV 188



 Score = 89.8 bits (213), Expect = 3e-19
 Identities = 37/62 (59%), Positives = 51/62 (82%), Gaps = 1/62 (1%)
 Frame = +3

Query: 510 EDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWR-KKTIHYVDGGDFGNREDKINDLLRR 686
           EDLIHEI+TVG  FK A+NFLWPFKL++P GGWR +K  H+++GGD G R++ IN L+++
Sbjct: 189 EDLIHEIYTVGPNFKQAANFLWPFKLSSPLGGWRERKFKHFIEGGDAGKRDEHINGLVQK 248

Query: 687 MV 692
           M+
Sbjct: 249 ML 250



 Score = 77.8 bits (183), Expect = 2e-15
 Identities = 38/63 (60%), Positives = 47/63 (74%), Gaps = 1/63 (1%)
 Frame = +3

Query: 69  RSSAIKKKREIF-KRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGI 245
           + SA +KKRE+  KRAE Y  EYR  ER++I LAR+AR  GNY+VP E KL FV+RIRGI
Sbjct: 40  KKSARQKKRELIAKRAEAYEAEYRAAEREQIELARKARAEGNYFVPHEPKLIFVVRIRGI 99

Query: 246 NQL 254
           N +
Sbjct: 100 NNI 102


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 20/88 (22%), Positives = 42/88 (47%)
 Frame = -1

Query: 710  YKSIYLNHPPEKIVDLVFAVTKVSPVDIMNGLLAPTTSWIVQFEGPQEITRVLELFSNSE 531
            +  ++  HP   +      + K+  + I++  L       VQ +   E+ ++  LF NSE
Sbjct: 1732 FYEVFFQHPSTNVYANDEGI-KIGALQIISFFLKNVPEITVQHQ--TEMLKMCSLFGNSE 1788

Query: 530  DLMDEVLTQIMLCLWSLFSTMLLEVIGI 447
            D+M + L+  ++ L+ L S    E++ +
Sbjct: 1789 DVMIKQLSIYVMSLFILRSQFPYELVNV 1816


>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 224

 Score = 29.1 bits (62), Expect = 0.69
 Identities = 11/39 (28%), Positives = 25/39 (64%)
 Frame = +3

Query: 75  SAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGN 191
           +++K+ REI ++ E+    +R+K ++  ++ + A N GN
Sbjct: 151 TSLKRNREIIEKEERSSFHFRVKPKNLDKVPKLAENEGN 189


>SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 188

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -1

Query: 626 MNGLLAPTTSWIVQFEGPQEITRVLELFSNSE 531
           MNGL  P   W +   GP  + R++  F   E
Sbjct: 75  MNGLPGPYVKWFLNSVGPDGLYRMVSAFDTKE 106


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 10/58 (17%)
 Frame = -1

Query: 626 MNGLLAPTTSWIVQFEGPQEIT----RVLELFSNS------EDLMDEVLTQIMLCLWS 483
           MN L+ P    IV  +GP EI     R+ EL  ++      + L+D ++  +++CLW+
Sbjct: 835 MNFLMKPL---IVALKGPPEIASQGLRIFELCLDNLTQEFLDPLLDSIMPDLLICLWN 889


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +3

Query: 108 RAEQYVKEYRIKERDEIRLARQARNRGNYYVPGE 209
           +A Q   ++ +     +RL     N+ N+++PGE
Sbjct: 309 KATQMTVDFLVDWAKSVRLCANRFNKSNFFIPGE 342


>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
           transferase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 453

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +1

Query: 169 DKHAIVATTTFPGKPNWHLSSESVVSTNYTEVRKVLXLFRLRQINNG 309
           D  A+ A  T P +P W   +  + S  + E   V+ +    Q+ NG
Sbjct: 176 DLDALAAKLTKPIRPLWVTPASRLTSAQFEEYFTVVLVTASAQVQNG 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,994,930
Number of Sequences: 5004
Number of extensions: 63745
Number of successful extensions: 173
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)