Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00512
(737 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814... 127 8e-30
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351... 122 4e-28
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 85 4e-17
10_06_0101 + 10736987-10737100,10737263-10737301,10737397-107374... 30 2.2
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120... 29 3.9
01_06_0457 - 29524544-29525962,29526518-29526606,29526841-295268... 28 8.9
>08_01_0835 +
8147177-8147359,8147871-8147968,8148045-8148102,
8148192-8148271,8148770-8148872,8148966-8149181
Length = 245
Score = 127 bits (307), Expect = 8e-30
Identities = 54/90 (60%), Positives = 75/90 (83%)
Frame = +1
Query: 241 VSTNYTEVRKVLXLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKR 420
++ + + RK+L L RLRQI NGVF+++NKAT+NMLR EPY+A+GYPNLKSVREL+YKR
Sbjct: 95 INAMHPKTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPNLKSVRELIYKR 154
Query: 421 GFAKLSGQRIPITSNSIVEKRLHKHNIICV 510
G+ KL+ QRIP+ +N ++E+ L KH+IIC+
Sbjct: 155 GYGKLNKQRIPLQNNKVIEEGLGKHDIICI 184
Score = 96.3 bits (229), Expect = 2e-20
Identities = 42/60 (70%), Positives = 48/60 (80%)
Frame = +3
Query: 510 EDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDKINDLLRRM 689
EDL+HEI TVG FK A+NFLWPFKL P GG +KK HYV+GGD GNRED IN+L+RRM
Sbjct: 185 EDLVHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNREDYINELIRRM 244
Score = 72.9 bits (171), Expect = 2e-13
Identities = 31/66 (46%), Positives = 48/66 (72%)
Frame = +3
Query: 60 LKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIR 239
L + A++ ++ IF RA+QY +EY +E++ ++L R+AR +G +YV EAKL FV+RIR
Sbjct: 34 LAEKKKAVESRKLIFARAKQYAQEYDAQEKELVQLKREARMKGGFYVSPEAKLLFVVRIR 93
Query: 240 GINQLH 257
GIN +H
Sbjct: 94 GINAMH 99
>04_04_1075 +
30634141-30634320,30634917-30635014,30635113-30635170,
30635259-30635338,30635686-30635788,30635847-30636080
Length = 250
Score = 122 bits (293), Expect = 4e-28
Identities = 55/96 (57%), Positives = 76/96 (79%), Gaps = 6/96 (6%)
Frame = +1
Query: 241 VSTNYTEVRKVLXLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKR 420
++ + + RK+L L RLRQI NGVF+++NKAT+NMLR EPY+A+GYPNLKSVREL+YKR
Sbjct: 94 INAMHPKTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPNLKSVRELIYKR 153
Query: 421 GFAKLSGQRIPITSNSIVEKR------LHKHNIICV 510
G+ KL+ QRIP+T+N ++E+ L KH+IIC+
Sbjct: 154 GYGKLNKQRIPLTNNKVIEESWCLYQGLGKHDIICI 189
Score = 94.3 bits (224), Expect = 9e-20
Identities = 41/60 (68%), Positives = 48/60 (80%)
Frame = +3
Query: 510 EDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDKINDLLRRM 689
EDL+HEI TVG FK A+NFLWPFKL P GG +KK HYV+GGD GNRE+ IN+L+RRM
Sbjct: 190 EDLVHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRM 249
Score = 70.1 bits (164), Expect = 2e-12
Identities = 29/63 (46%), Positives = 46/63 (73%)
Frame = +3
Query: 69 RSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGIN 248
+ +I+ ++ IF RA+QY +EY +E++ ++L R+AR +G +YV E KL FV+RIRGIN
Sbjct: 36 KKKSIESRKLIFSRAKQYAEEYEAQEKELVQLKREARMKGGFYVSPEEKLLFVVRIRGIN 95
Query: 249 QLH 257
+H
Sbjct: 96 AMH 98
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 85.4 bits (202), Expect = 4e-17
Identities = 35/86 (40%), Positives = 59/86 (68%)
Frame = +1
Query: 253 YTEVRKVLXLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAK 432
+ +R++L RL Q+ GVF++ AT+ L + EP+I +G+PNLK+V++L+YK+G
Sbjct: 101 HPHMRRILRKLRLTQVLTGVFLKATDATMKRLLVVEPFITYGFPNLKNVKDLIYKKGRGF 160
Query: 433 LSGQRIPITSNSIVEKRLHKHNIICV 510
L + P+TSN ++EK L ++ IIC+
Sbjct: 161 LDKEPFPLTSNDLIEKALGEYGIICL 186
Score = 46.0 bits (104), Expect = 3e-05
Identities = 22/45 (48%), Positives = 28/45 (62%)
Frame = +3
Query: 510 EDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGD 644
EDL+HEI +VG F+ ASNFL PFKL P + K + DG +
Sbjct: 187 EDLVHEIASVGPHFREASNFLMPFKLKCPERRLQMKKKPFKDGAE 231
Score = 35.1 bits (77), Expect = 0.059
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Frame = +3
Query: 105 KRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGE---AKLAFVIRIRGINQLH 257
KR E +V+E+R KE D +R+ + + R P E +KL F IRI G LH
Sbjct: 50 KRPEDFVREFRNKELDFVRMKTRLKVRK--LPPAETLNSKLVFAIRIPGTMDLH 101
>10_06_0101 +
10736987-10737100,10737263-10737301,10737397-10737474,
10737539-10737685,10737781-10737888,10738115-10738449,
10738572-10739544,10739702-10739980
Length = 690
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +3
Query: 57 TLKRRSSAIKKKREIF--KRAEQYVKE-YRIKERDEIRLARQARNRGNYY 197
TL+ R+ IK KRE+F KR E ++E ++ + E+ + A NR +
Sbjct: 149 TLETRTDPIKLKREVFRRKRKEHRIQELLQVDKEAELHMRNVATNRSRNF 198
>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
34512493-34513964,34514114-34514377,34514761-34514978,
34515759-34516030,34516190-34516559,34516578-34516797,
34516819-34518931,34518941-34519193,34519269-34519401,
34520597-34521114,34521207-34522115,34522195-34522368,
34522833-34522882,34523963-34524035,34524413-34524477,
34524736-34525522,34525622-34525878,34525989-34526109,
34526315-34526956
Length = 5320
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/72 (23%), Positives = 36/72 (50%)
Frame = -1
Query: 665 LVFAVTKVSPVDIMNGLLAPTTSWIVQFEGPQEITRVLELFSNSEDLMDEVLTQIMLCLW 486
+V A +++ + + L+ + W+ G ++LEL N+E + D+VL Q + +
Sbjct: 1112 IVSASSRILDGECTSSALSYSLGWLSPPSGSVIAAQLLELGKNNEIVTDQVLRQELALVM 1171
Query: 485 SLFSTMLLEVIG 450
++L +IG
Sbjct: 1172 PKIYSLLSNLIG 1183
>01_06_0457 -
29524544-29525962,29526518-29526606,29526841-29526892,
29527573-29527677,29528181-29528208,29528279-29528343,
29528808-29528880,29528932-29529113
Length = 670
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 363 LHCLGIPQLKECP*VSIQTWIRQAEW 440
LHC G+PQ+K +W+R +E+
Sbjct: 109 LHCSGLPQIKLLSRFRRSSWVRTSEY 134
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,427,683
Number of Sequences: 37544
Number of extensions: 408660
Number of successful extensions: 990
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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