Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00512
         (737 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)      136   2e-32
SB_38184| Best HMM Match : HisKA_2 (HMM E-Value=8.6)                   31   0.97 
SB_43177| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_3843| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.2  
SB_13893| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)                    28   9.1  
SB_39708| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  

>SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)
          Length = 245

 Score =  136 bits (328), Expect = 2e-32
 Identities = 63/84 (75%), Positives = 72/84 (85%)
 Frame = +1

Query: 259 EVRKVLXLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLS 438
           +VRK+L L RLRQINNGVFVRLNKAT NMLRI +PYIA+GYPNLKSVREL+YKRG+ K+ 
Sbjct: 101 KVRKILQLLRLRQINNGVFVRLNKATANMLRIVQPYIAFGYPNLKSVRELIYKRGYGKVD 160

Query: 439 GQRIPITSNSIVEKRLHKHNIICV 510
            QR+ +T NSIVEK L KH IICV
Sbjct: 161 KQRVALTDNSIVEKVLGKHGIICV 184



 Score =  106 bits (255), Expect = 2e-23
 Identities = 47/60 (78%), Positives = 53/60 (88%)
 Frame = +3

Query: 510 EDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDKINDLLRRM 689
           EDLIHEIFTVGE FK ASNFLWPFKL++P GG+RKKT H+V+GGD GNREDKIN L+R M
Sbjct: 185 EDLIHEIFTVGEHFKEASNFLWPFKLSSPKGGFRKKTTHFVEGGDHGNREDKINGLVRVM 244



 Score = 85.4 bits (202), Expect = 4e-17
 Identities = 38/54 (70%), Positives = 47/54 (87%)
 Frame = +3

Query: 87  KKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGIN 248
           K++EIFKRAE+YVKEYR KE DE+R+ + A+  GN+YVP EA+LAFVIRIRGIN
Sbjct: 43  KRKEIFKRAEKYVKEYRQKEVDELRMKKMAKKHGNFYVPPEARLAFVIRIRGIN 96


>SB_38184| Best HMM Match : HisKA_2 (HMM E-Value=8.6)
          Length = 528

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 18/39 (46%), Positives = 21/39 (53%)
 Frame = +3

Query: 504 LCEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKT 620
           LC DL  E+ TV E F+   NFL  FK+  P     KKT
Sbjct: 347 LCGDL-SEMITVEEAFQMCENFLEKFKIFFPLDAPNKKT 384


>SB_43177| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 471

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -1

Query: 707 KSIYLNHPPEKIVDLVFAVTKVSPVDIMNG 618
           K IYL HP   +VD+  AV   + VDI +G
Sbjct: 13  KQIYLYHPTPNLVDVSKAVFMGAAVDIRSG 42


>SB_3843| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 72

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 69  RSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNY 194
           R  AI ++RE+++R E Y +    + R+  R     R R  Y
Sbjct: 16  RRRAINRRREMYRRREMYRRREMYRRREMYRRREMYRRREMY 57


>SB_13893| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 77

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 69  RSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNY 194
           R   + ++REI++R E Y +    + R+  RL    R R  Y
Sbjct: 27  RRREMYRRREIYRRREMYRRREMYRRREMYRLREMYRRREMY 68


>SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)
          Length = 712

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 141 KERDEIRLARQARNRGNYYVP 203
           K RD   +AR+ R+RG YY+P
Sbjct: 483 KIRDTSSIARETRSRGPYYLP 503


>SB_39708| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 519 IHEIFTVGEKFKYASNFLWPFKLNN 593
           ++ + T   KF YA++ LW F  NN
Sbjct: 58  LNRVITTTGKFSYATDDLWQFSCNN 82


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,462,366
Number of Sequences: 59808
Number of extensions: 487277
Number of successful extensions: 1769
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1768
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)