Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00512
         (737 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal pro...   125   4e-29
U41106-1|AAA82409.1|  347|Caenorhabditis elegans Hypothetical pr...    32   0.37 
AL023816-4|CAA19433.2|  344|Caenorhabditis elegans Hypothetical ...    29   3.4  
AF101318-6|AAC69348.2|  946|Caenorhabditis elegans Hypothetical ...    29   3.4  

>AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7 protein.
          Length = 244

 Score =  125 bits (301), Expect = 4e-29
 Identities = 54/82 (65%), Positives = 69/82 (84%)
 Frame = +1

Query: 265 RKVLXLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQ 444
           RK L + RLRQINNGVFV+LNKAT+ +LRI EPY+AWGYPN K++ +L+YKRG+AK+ G 
Sbjct: 102 RKALQILRLRQINNGVFVKLNKATLPLLRIIEPYVAWGYPNNKTIHDLLYKRGYAKVDGN 161

Query: 445 RIPITSNSIVEKRLHKHNIICV 510
           R+PIT N+IVE+ L K NIIC+
Sbjct: 162 RVPITDNTIVEQSLGKFNIICL 183



 Score =  111 bits (268), Expect = 4e-25
 Identities = 48/61 (78%), Positives = 54/61 (88%)
 Frame = +3

Query: 510 EDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDKINDLLRRM 689
           EDL HEI TVG  FK A+NFLWPFKLNNPTGGW KKT H+V+GGDFGNRED+IN+LLR+M
Sbjct: 184 EDLAHEIATVGPHFKEATNFLWPFKLNNPTGGWTKKTNHFVEGGDFGNREDQINNLLRKM 243

Query: 690 V 692
           V
Sbjct: 244 V 244



 Score = 81.8 bits (193), Expect = 5e-16
 Identities = 35/61 (57%), Positives = 49/61 (80%)
 Frame = +3

Query: 84  KKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQLHRS 263
           +KK + FKRAE+YV+EYR  +++ +RL R+A  +G++YVP E K+AFV+RIRGINQLH  
Sbjct: 41  EKKTQYFKRAEKYVQEYRNAQKEGLRLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPK 100

Query: 264 P 266
           P
Sbjct: 101 P 101


>U41106-1|AAA82409.1|  347|Caenorhabditis elegans Hypothetical
           protein W06A11.4 protein.
          Length = 347

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 21/61 (34%), Positives = 27/61 (44%)
 Frame = +1

Query: 85  RRRGKSSRGLNSTSRNTASRNVMKSD*PDKHAIVATTTFPGKPNWHLSSESVVSTNYTEV 264
           ++R K SR     SR  ASR  +K     K    A +T P +PN +  S S  S  Y   
Sbjct: 21  KKRRKMSRKFTKKSRKRASRASIKLANEQKAKKYANSTVPMEPNVYTDSGSPFSNRYASN 80

Query: 265 R 267
           R
Sbjct: 81  R 81


>AL023816-4|CAA19433.2|  344|Caenorhabditis elegans Hypothetical
           protein T05G11.6 protein.
          Length = 344

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = -1

Query: 575 PQEITRVLELFSNSEDLMDEVLTQIM--LCLWSLFSTMLLEVIGIRCPLS 432
           P E       F+ S +L   +L++I   L +W + +  +L +I I+CPLS
Sbjct: 86  PSECIPPYSYFTVSMELGFSILSKISGKLVVWIVVAMSILRLIAIKCPLS 135


>AF101318-6|AAC69348.2|  946|Caenorhabditis elegans Hypothetical
           protein Y73C8C.8 protein.
          Length = 946

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = -1

Query: 707 KSIYLNHPPEKIVDLVFAVTKVSPVDIMNGLLAPTTSWIVQFEGPQEITRVLELF 543
           K +  N+ PE+++ L +  T  +PV  +  L+  +   +V +   +EI   L LF
Sbjct: 17  KKLVCNYIPEELLPLEWDCTDKNPVKNIQNLIDSSNGKLVVYGSAEEIFESLNLF 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,507,700
Number of Sequences: 27780
Number of extensions: 356870
Number of successful extensions: 915
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)