Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00512
(737 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C) 123 1e-28
At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C) 123 1e-28
At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) simila... 121 4e-28
At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) simila... 121 4e-28
At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) simila... 121 4e-28
At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B) 120 1e-27
At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) simila... 73 3e-13
At1g24650.1 68414.m03102 leucine-rich repeat family protein / pr... 30 1.4
At5g38830.1 68418.m04697 tRNA synthetase class I (C) family prot... 30 1.8
At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa... 30 1.8
At3g52860.1 68416.m05825 expressed protein 30 1.8
At4g38240.2 68417.m05401 alpha-1,3-mannosyl-glycoprotein beta-1,... 29 2.4
At4g38240.1 68417.m05400 alpha-1,3-mannosyl-glycoprotein beta-1,... 29 2.4
At1g53510.1 68414.m06068 mitogen-activated protein kinase, putat... 28 7.4
>At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C)
Length = 247
Score = 123 bits (296), Expect = 1e-28
Identities = 55/84 (65%), Positives = 70/84 (83%)
Frame = +1
Query: 259 EVRKVLXLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLS 438
+ +K+L L RLRQI NGVF+++NKATVNMLR EPY+ +GYPNLKSV+EL+YKRG+ KL+
Sbjct: 103 KTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYGYPNLKSVKELIYKRGYGKLN 162
Query: 439 GQRIPITSNSIVEKRLHKHNIICV 510
QRI +T NSIV++ L KH IICV
Sbjct: 163 HQRIALTDNSIVDQALGKHGIICV 186
Score = 92.3 bits (219), Expect = 3e-19
Identities = 41/60 (68%), Positives = 48/60 (80%)
Frame = +3
Query: 510 EDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDKINDLLRRM 689
EDLIHEI TVG FK A+NFLWPF+L P GG +KK HYV+GGD GNRE+ IN+L+RRM
Sbjct: 187 EDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFINELVRRM 246
Score = 72.1 bits (169), Expect = 3e-13
Identities = 32/62 (51%), Positives = 46/62 (74%)
Frame = +3
Query: 69 RSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGIN 248
+ +++ ++ IFKRAEQY KEY K+ + IRL R+A+ +G +YV EAKL F+IRIRGIN
Sbjct: 39 KKKSVEARKLIFKRAEQYAKEYAEKDNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGIN 98
Query: 249 QL 254
+
Sbjct: 99 AI 100
>At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C)
Length = 242
Score = 123 bits (296), Expect = 1e-28
Identities = 55/84 (65%), Positives = 70/84 (83%)
Frame = +1
Query: 259 EVRKVLXLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLS 438
+ +K+L L RLRQI NGVF+++NKATVNMLR EPY+ +GYPNLKSV+EL+YKRG+ KL+
Sbjct: 98 KTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYGYPNLKSVKELIYKRGYGKLN 157
Query: 439 GQRIPITSNSIVEKRLHKHNIICV 510
QRI +T NSIV++ L KH IICV
Sbjct: 158 HQRIALTDNSIVDQALGKHGIICV 181
Score = 92.3 bits (219), Expect = 3e-19
Identities = 41/60 (68%), Positives = 48/60 (80%)
Frame = +3
Query: 510 EDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDKINDLLRRM 689
EDLIHEI TVG FK A+NFLWPF+L P GG +KK HYV+GGD GNRE+ IN+L+RRM
Sbjct: 182 EDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFINELVRRM 241
Score = 72.1 bits (169), Expect = 3e-13
Identities = 32/62 (51%), Positives = 46/62 (74%)
Frame = +3
Query: 69 RSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGIN 248
+ +++ ++ IFKRAEQY KEY K+ + IRL R+A+ +G +YV EAKL F+IRIRGIN
Sbjct: 34 KKKSVEARKLIFKRAEQYAKEYAEKDNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGIN 93
Query: 249 QL 254
+
Sbjct: 94 AI 95
>At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 121 bits (292), Expect = 4e-28
Identities = 54/84 (64%), Positives = 69/84 (82%)
Frame = +1
Query: 259 EVRKVLXLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLS 438
+ +K+L L RLRQI NGVF+++NKAT+NMLR EPY+ +GYPNLKSV+EL+YKRGF KL+
Sbjct: 100 KTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLN 159
Query: 439 GQRIPITSNSIVEKRLHKHNIICV 510
QR +T NSIV++ L KH IICV
Sbjct: 160 HQRTALTDNSIVDQGLGKHGIICV 183
Score = 92.7 bits (220), Expect = 2e-19
Identities = 41/60 (68%), Positives = 48/60 (80%)
Frame = +3
Query: 510 EDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDKINDLLRRM 689
EDLIHEI TVG FK A+NFLWPF+L P GG +KK HYV+GGD GNRE+ IN+L+RRM
Sbjct: 184 EDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGMKKKRNHYVEGGDAGNRENFINELVRRM 243
Score = 70.1 bits (164), Expect = 1e-12
Identities = 32/57 (56%), Positives = 45/57 (78%)
Frame = +3
Query: 84 KKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQL 254
+K++ IF RA+QY KEY+ KER+ I+L R+A+ +G +YV EAKL F+IRIRGIN +
Sbjct: 41 EKRKLIFNRAKQYSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAI 97
>At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 121 bits (292), Expect = 4e-28
Identities = 54/84 (64%), Positives = 69/84 (82%)
Frame = +1
Query: 259 EVRKVLXLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLS 438
+ +K+L L RLRQI NGVF+++NKAT+NMLR EPY+ +GYPNLKSV+EL+YKRGF KL+
Sbjct: 100 KTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLN 159
Query: 439 GQRIPITSNSIVEKRLHKHNIICV 510
QR +T NSIV++ L KH IICV
Sbjct: 160 HQRTALTDNSIVDQGLGKHGIICV 183
Score = 92.7 bits (220), Expect = 2e-19
Identities = 41/60 (68%), Positives = 48/60 (80%)
Frame = +3
Query: 510 EDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDKINDLLRRM 689
EDLIHEI TVG FK A+NFLWPF+L P GG +KK HYV+GGD GNRE+ IN+L+RRM
Sbjct: 184 EDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGMKKKRNHYVEGGDAGNRENFINELVRRM 243
Score = 70.1 bits (164), Expect = 1e-12
Identities = 32/57 (56%), Positives = 45/57 (78%)
Frame = +3
Query: 84 KKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQL 254
+K++ IF RA+QY KEY+ KER+ I+L R+A+ +G +YV EAKL F+IRIRGIN +
Sbjct: 41 EKRKLIFNRAKQYSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAI 97
>At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 121 bits (292), Expect = 4e-28
Identities = 54/84 (64%), Positives = 69/84 (82%)
Frame = +1
Query: 259 EVRKVLXLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLS 438
+ +K+L L RLRQI NGVF+++NKAT+NMLR EPY+ +GYPNLKSV+EL+YKRGF KL+
Sbjct: 100 KTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLN 159
Query: 439 GQRIPITSNSIVEKRLHKHNIICV 510
QR +T NSIV++ L KH IICV
Sbjct: 160 HQRTALTDNSIVDQGLGKHGIICV 183
Score = 92.7 bits (220), Expect = 2e-19
Identities = 41/60 (68%), Positives = 48/60 (80%)
Frame = +3
Query: 510 EDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDKINDLLRRM 689
EDLIHEI TVG FK A+NFLWPF+L P GG +KK HYV+GGD GNRE+ IN+L+RRM
Sbjct: 184 EDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGMKKKRNHYVEGGDAGNRENFINELVRRM 243
Score = 70.1 bits (164), Expect = 1e-12
Identities = 32/57 (56%), Positives = 45/57 (78%)
Frame = +3
Query: 84 KKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQL 254
+K++ IF RA+QY KEY+ KER+ I+L R+A+ +G +YV EAKL F+IRIRGIN +
Sbjct: 41 EKRKLIFNRAKQYSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAI 97
>At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B)
Length = 242
Score = 120 bits (288), Expect = 1e-27
Identities = 53/83 (63%), Positives = 69/83 (83%)
Frame = +1
Query: 259 EVRKVLXLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLS 438
+ +K+L L RLRQI NGVF+++NKAT+NMLR EPY+ +G+PNLKSV+EL+YKRG+ KL+
Sbjct: 98 KTKKILQLLRLRQIFNGVFLKVNKATMNMLRRVEPYVTYGFPNLKSVKELIYKRGYGKLN 157
Query: 439 GQRIPITSNSIVEKRLHKHNIIC 507
QRI +T NSIVE+ L KH IIC
Sbjct: 158 HQRIALTDNSIVEQALGKHGIIC 180
Score = 92.7 bits (220), Expect = 2e-19
Identities = 41/60 (68%), Positives = 48/60 (80%)
Frame = +3
Query: 510 EDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDKINDLLRRM 689
EDLIHEI TVG FK A+NFLWPF+L P GG +KK HYV+GGD GNRE+ IN+L+RRM
Sbjct: 182 EDLIHEILTVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFINELIRRM 241
Score = 68.9 bits (161), Expect = 3e-12
Identities = 32/57 (56%), Positives = 43/57 (75%)
Frame = +3
Query: 84 KKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQL 254
+ ++ IFKRAEQY KEY KE++ I L R+A+ +G +YV EAKL F+IRIRGIN +
Sbjct: 39 ENRKLIFKRAEQYSKEYAEKEKELISLKREAKLKGGFYVDPEAKLLFIIRIRGINAI 95
>At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) similar
to ribosomal protein L7 GB:AAA03081 GI:307388 from [Homo
sapiens]
Length = 247
Score = 72.5 bits (170), Expect = 3e-13
Identities = 28/84 (33%), Positives = 53/84 (63%)
Frame = +1
Query: 253 YTEVRKVLXLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAK 432
+ + +++L +L+ + GVF + + L +PY+ +GYPN KSV++L+YK+G
Sbjct: 100 HPKTKRILNNLQLKSVFTGVFAKATDSLFQKLLKVQPYVTYGYPNDKSVKDLIYKKGCTI 159
Query: 433 LSGQRIPITSNSIVEKRLHKHNII 504
+ G +P+T N+I+E+ L +H I+
Sbjct: 160 IEGNPVPLTDNNIIEQALGEHKIL 183
Score = 63.7 bits (148), Expect = 1e-10
Identities = 32/62 (51%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Frame = +3
Query: 510 EDLIHEIFTVGEKFKYASNFLWPFKLNNPTGG--WRKKTIHYVDGGDFGNREDKINDLLR 683
EDL++EI VG+ F+ FL P KLN P RKK + + +GGD GNREDKINDL+
Sbjct: 186 EDLVNEIARVGDHFREVMRFLGPLKLNKPVADVLHRKKQV-FSEGGDTGNREDKINDLIS 244
Query: 684 RM 689
+M
Sbjct: 245 KM 246
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/58 (39%), Positives = 35/58 (60%)
Frame = +3
Query: 84 KKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQLH 257
KKK KR E +V E+R KE D IR+ ++ + + P ++ L F+IRI+G N +H
Sbjct: 43 KKKVSDIKRPEDFVHEFRAKEVDMIRMKQRVKRPKSSPPPVKSDLVFIIRIQGKNDMH 100
>At1g24650.1 68414.m03102 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 886
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 507 CEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGW 608
C+ ++ + ++ E F Y NF +K N+P GW
Sbjct: 323 CDPRVNTLLSIVEAFGYPVNFAEKWKGNDPCSGW 356
>At5g38830.1 68418.m04697 tRNA synthetase class I (C) family protein
similar to SP|Q06752 Cysteinyl-tRNA synthetase (EC
6.1.1.16) (Cysteine--tRNA ligase) (CysRS) {Bacillus
subtilis}; contains Pfam profile PF01406: tRNA
synthetases class I (C)
Length = 511
Score = 29.9 bits (64), Expect = 1.8
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Frame = +1
Query: 4 CSSIVRGERLFALG---DYRLR*RGVLLPSRRRGKSSRGLNSTSRNTASRNVMKSD*PDK 174
C +V G+ F++ +Y + G LL R G+ ++S RN A + K+ PD+
Sbjct: 139 CGYVVEGDVFFSVDKSPNYG-KLSGQLLEHTRAGERV-AVDSRKRNPADFALWKAAKPDE 196
Query: 175 HAIVATTTFPGKPNWHLSSESVVSTNY 255
+ + PG+P WH+ S +S +Y
Sbjct: 197 PSWESPWG-PGRPGWHIEC-SAMSVHY 221
>At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) family
protein contains Pfam profile: PF00097 zinc finger, C3HC4
type (RING finger)
Length = 4706
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/78 (25%), Positives = 37/78 (47%)
Frame = -1
Query: 683 PEKIVDLVFAVTKVSPVDIMNGLLAPTTSWIVQFEGPQEITRVLELFSNSEDLMDEVLTQ 504
P+ + LV A ++ + + LA W+ G ++LEL N+E L+D+VL Q
Sbjct: 1102 PKTDMWLVSASMRILDGECSSTALAYNLGWLSHPGGSAIAAQLLELGKNNEILIDQVLRQ 1161
Query: 503 IMLCLWSLFSTMLLEVIG 450
+ ++L ++G
Sbjct: 1162 ELALAMPKIYSILARLLG 1179
>At3g52860.1 68416.m05825 expressed protein
Length = 156
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 48 LQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEI 158
++ LK + IKK +F+ +++ VKE K RDE+
Sbjct: 117 MEEELKTKDELIKKHMRLFQESQKLVKEQIEKHRDEL 153
>At4g38240.2 68417.m05401 alpha-1,3-mannosyl-glycoprotein
beta-1,2-N-acetylglucosaminyltransferase, putative
similar to N-acetylglucosaminyltransferase I from
Arabidopsis thaliana [gi:5139335]; contains AT-AC
non-consensus splice sites at intron 13
Length = 444
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 552 KYASNFLWPFKLNNPTGGWRKKTIHYVDGGDF 647
++ S +L P KLN+ T W+ K + Y+ G++
Sbjct: 321 QFFSQYLEPIKLNDVTVDWKAKDLGYLTEGNY 352
>At4g38240.1 68417.m05400 alpha-1,3-mannosyl-glycoprotein
beta-1,2-N-acetylglucosaminyltransferase, putative
similar to N-acetylglucosaminyltransferase I from
Arabidopsis thaliana [gi:5139335]; contains AT-AC
non-consensus splice sites at intron 13
Length = 444
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 552 KYASNFLWPFKLNNPTGGWRKKTIHYVDGGDF 647
++ S +L P KLN+ T W+ K + Y+ G++
Sbjct: 321 QFFSQYLEPIKLNDVTVDWKAKDLGYLTEGNY 352
>At1g53510.1 68414.m06068 mitogen-activated protein kinase, putative
/ MAPK, putative (MPK18) mitogen-activated protein
kinase (MAPK)(AtMPK18), PMID:12119167
Length = 603
Score = 27.9 bits (59), Expect = 7.4
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 227 HPNPWYQPTTPKSVKFXN 280
HPNP++QP PK+ + N
Sbjct: 544 HPNPYFQPQLPKTDQLNN 561
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,671,920
Number of Sequences: 28952
Number of extensions: 332047
Number of successful extensions: 894
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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