Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00511
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    26   6.7  
SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF...    25   8.9  
SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces pom...    25   8.9  
SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|ch...    25   8.9  

>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = +2

Query: 482 LVRNLNYKRRNINGRHLNNDAIAC-CSFSQLSVFNKLNAQFINI 610
           +V N N+KR++I   H +  + AC  +FS   V ++L+  F++I
Sbjct: 361 MVVNANHKRQSIQVNHFDITSDACMLNFSH--VLSRLSEPFLDI 402


>SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF4E
           4F complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 236 QSAHDGKNIKKVYLFIYLFTTRRTNSPLGQ 325
           QS H G N+ +++L++ L     T  P G+
Sbjct: 144 QSKHKGSNLDELWLYMVLAAIGETLDPTGK 173


>SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 431

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 368 RDLYWLFVSIICYIIV 321
           R LYW+FV++ C  ++
Sbjct: 135 RILYWIFVAVACIFVI 150


>SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 614 VFKHSHCIFLSFYSRDCFYSIVIFHRLLFFEYILLLMFV 730
           VF+H HC  L  Y  +      +++ LLF  ++L ++FV
Sbjct: 6   VFEHVHCSVL--YKFNNIVKFDLYNVLLFLLFLLPVLFV 42


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,798,167
Number of Sequences: 5004
Number of extensions: 53045
Number of successful extensions: 144
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)