Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00511
         (763 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_215| Best HMM Match : ALG3 (HMM E-Value=0.18)                       30   2.4  
SB_5913| Best HMM Match : RVT_1 (HMM E-Value=1.2)                      28   7.2  
SB_4406| Best HMM Match : NGF (HMM E-Value=6.8)                        28   9.5  

>SB_215| Best HMM Match : ALG3 (HMM E-Value=0.18)
          Length = 521

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +2

Query: 587 LNAQFINIIVFKHSHCIFLSFYS-RDCFYSIVIFHRLLFFEYILLLMFV 730
           L   F+++ +F+    +F+S Y  RD F S+ I   +    YIL +MFV
Sbjct: 58  LRVMFVSLYIFRD---VFVSLYVLRDMFVSLYILRVMFVSLYILRVMFV 103



 Score = 29.5 bits (63), Expect = 3.1
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +2

Query: 587 LNAQFINIIVFKHSHCIFLSFYS-RDCFYSIVIFHRLLFFEYILLLMFVGTSI 742
           L   F+++ +F+    +F+S Y  RD F S+ +   +    YIL +MFV   I
Sbjct: 18  LRVMFVSLYIFRD---LFVSLYIFRDVFVSLYVLRVMFVSLYILRVMFVSLYI 67



 Score = 28.7 bits (61), Expect = 5.5
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +2

Query: 560 FSQLSVFNKLNAQFINIIVFKHSHCIFLSFYS-RDCFYSIVIFHRLLFFEYILLLMFVGT 736
           F  L +F  L   F+++ + +    +F+S Y  RD F S+ IF  +    Y+L +MFV  
Sbjct: 2   FVSLYIFRDL---FVSLYILR---VMFVSLYIFRDLFVSLYIFRDVFVSLYVLRVMFVSL 55

Query: 737 SI 742
            I
Sbjct: 56  YI 57


>SB_5913| Best HMM Match : RVT_1 (HMM E-Value=1.2)
          Length = 628

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +2

Query: 515 INGRHLNNDAIACCSF-SQLSVFNKLNAQFINIIVFKH-SHCI 637
           I G HL   A   C   S+ S+ + + AQF     +KH SHC+
Sbjct: 567 IRGVHLPGIANRACDLLSRWSLVSSVQAQFYEEFAYKHNSHCL 609


>SB_4406| Best HMM Match : NGF (HMM E-Value=6.8)
          Length = 405

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/49 (36%), Positives = 22/49 (44%)
 Frame = +2

Query: 116 RSSPLVRWVYPQRSLFTALPRSVPRAVSHVIALLVVLFVNQSAHDGKNI 262
           R SP V+W  PQR+   +   + P AV        VL V Q  H G  I
Sbjct: 204 RGSPSVKW-NPQRTSAQSWRAAFPDAVQTSTTSKYVLEVKQGKHSGLTI 251


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,010,003
Number of Sequences: 59808
Number of extensions: 379269
Number of successful extensions: 859
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)