Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00511
         (763 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   1.3  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.3  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.3  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   3.1  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    23   4.1  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   4.1  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   4.1  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   4.1  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    22   7.1  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   7.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   7.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   7.1  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.4  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   9.4  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   9.4  
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           21   9.4  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   9.4  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -3

Query: 383 LFILGRDL-YWLFVSIICYIIVLMGCWFSLW 294
           +F+L R L Y+LF + I   ++++  W S W
Sbjct: 237 VFVLKRRLGYYLFHTYIPTCLIVIMSWVSFW 267


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +3

Query: 147 HRGHCSPLSPGVFPELCHM 203
           H G C  + PG+F   C M
Sbjct: 95  HDGSCLYVPPGIFKSTCKM 113


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +3

Query: 147 HRGHCSPLSPGVFPELCHM 203
           H G C  + PG+F   C M
Sbjct: 95  HDGSCLYVPPGIFKSTCKM 113


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 120 HPHWYAGSIHRGHCSPLSPGVFP 188
           H H +A + H  H +PL+   +P
Sbjct: 432 HHHSHAATPHHQHSTPLAHSSYP 454


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +3

Query: 147 HRGHCSPLSPGVFPELC 197
           H G C  + PG+F   C
Sbjct: 95  HNGSCLYVPPGIFKSTC 111


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 79  DTYFKFSKH*YIDNVKTVLKFL 14
           DTYF   KH Y+  + +  KF+
Sbjct: 89  DTYFYNGKHSYLHTITSPNKFV 110


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +3

Query: 147 HRGHCSPLSPGVFPELC 197
           H G C  + PG+F   C
Sbjct: 163 HNGSCLYVPPGIFKSTC 179


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +3

Query: 147 HRGHCSPLSPGVFPELC 197
           H G C  + PG+F   C
Sbjct: 163 HNGSCLYVPPGIFKSTC 179


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +3

Query: 147 HRGHCSPLSPGVFPELC 197
           H G C  + PG+F   C
Sbjct: 95  HDGSCLYVPPGIFKSTC 111


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +3

Query: 147 HRGHCSPLSPGVFPELC 197
           H G C  + PG+F   C
Sbjct: 95  HDGSCLYVPPGIFKSTC 111


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = -3

Query: 353 LFVSIICYIIVLMG 312
           LF++I+C++  L+G
Sbjct: 417 LFIAIVCFVSYLIG 430


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = -3

Query: 353 LFVSIICYIIVLMG 312
           LF++I+C++  L+G
Sbjct: 470 LFIAIVCFVSYLIG 483


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +3

Query: 147 HRGHCSPLSPGVFPELC 197
           H G C  + PG+F   C
Sbjct: 95  HDGSCLYVPPGIFGSTC 111


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -1

Query: 79  DTYFKFSKH*YIDNVKTVLKFL 14
           DTYF   KH Y+  +    K L
Sbjct: 121 DTYFYNGKHSYVHTITVPNKLL 142


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 141 SIHRGHCSPLSPGVF 185
           S+H  + SPLS G+F
Sbjct: 214 SVHYHYLSPLSAGLF 228


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 141 SIHRGHCSPLSPGVF 185
           S+H  + SPLS G+F
Sbjct: 85  SVHYHYLSPLSAGLF 99


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 141 SIHRGHCSPLSPGVF 185
           S+H  + SPLS G+F
Sbjct: 214 SVHYHYLSPLSAGLF 228


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,526
Number of Sequences: 438
Number of extensions: 3692
Number of successful extensions: 21
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)