Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00510
         (801 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr...    56   8e-09
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc...    28   1.3  
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     26   5.4  
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos...    26   7.2  

>SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 308

 Score = 55.6 bits (128), Expect = 8e-09
 Identities = 25/72 (34%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
 Frame = +3

Query: 66  SRHDMLAWVNDCLQSNFAKIEELCTGAAYCQFMDMLFPGSVPMKRIKFKTNLEHEYIQNF 245
           SR ++LAW+N        +IE+   G A  Q  D ++   +P+K++ F+ N E++YI N+
Sbjct: 4   SRQELLAWINQVTSLGLTRIEDCGKGYAMIQIFDSIYQ-DIPLKKVNFECNNEYQYINNW 62

Query: 246 KILKLV-LKRWV 278
           K+L+ V LK+ +
Sbjct: 63  KVLQQVFLKKGI 74


>SPBC6B1.04 |mde4||monopolin-like complex subunit
           Mde4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -1

Query: 522 LTHLGYSPTIGSNSMVIYLNKYLSLSHFL 436
           L +LG S T   N ++ YL+K L+L+H L
Sbjct: 12  LDNLGLSVTSRRNQILFYLSKALNLAHLL 40


>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/37 (24%), Positives = 25/37 (67%)
 Frame = +2

Query: 50  YVRKSIAA*YASVGE*LSPVKLCEDRRVVYRCRLLPV 160
           Y++  ++  ++S+ +  SP+ + E+++ ++R  +LPV
Sbjct: 58  YLKNRVSRSWSSIDDAPSPLDIPEEQKALFRQNILPV 94


>SPBC8D2.01 |gsk31||serine/threonine protein kinase
           Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 381

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 206 FDSFHWYTAREQHVHELAIGGTCTQLF 126
           FD   WYT R + +  L+I     QLF
Sbjct: 109 FDDMRWYTRRRKSIPNLSIKLYAFQLF 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,307,488
Number of Sequences: 5004
Number of extensions: 69215
Number of successful extensions: 147
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)