Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00510
         (801 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18003| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_45790| Best HMM Match : SERTA (HMM E-Value=2.8e-07)                 29   3.3  
SB_7838| Best HMM Match : Filamin (HMM E-Value=1.1e-22)                29   5.8  

>SB_18003| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 531

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 16/29 (55%), Positives = 21/29 (72%)
 Frame = +3

Query: 186 VPMKRIKFKTNLEHEYIQNFKILKLVLKR 272
           VP+K++KF    EHEYI NFKIL+   K+
Sbjct: 43  VPLKKVKFGAKQEHEYIANFKILQSAFKK 71


>SB_45790| Best HMM Match : SERTA (HMM E-Value=2.8e-07)
          Length = 1213

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -3

Query: 646 QCEHCQPSRNM---RSKPQLYLE*SHPSSQKALLFQSRNRQGDD 524
           QC+HC PS+ +   R   Q  LE  H  +   L+ Q  N  G++
Sbjct: 640 QCKHCSPSKRLQRRRKMQQKVLETDHKGTADQLVDQCTNDVGNE 683


>SB_7838| Best HMM Match : Filamin (HMM E-Value=1.1e-22)
          Length = 820

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 141 GAAYCQFMDMLFPGSVPMKRIKFKTNLE 224
           G A C+ ++ L PG +P  + K KTN E
Sbjct: 456 GMAICELVNALQPGLIPDSKYKEKTNSE 483


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,192,275
Number of Sequences: 59808
Number of extensions: 458498
Number of successful extensions: 764
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)