Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00510
         (801 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical ...   102   3e-22
AL031269-2|CAA20332.1|  299|Caenorhabditis elegans Hypothetical ...    80   2e-15
Z50858-4|CAA90724.2|  156|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AF039710-3|AAD32272.1|  347|Caenorhabditis elegans Serpentine re...    28   6.8  

>AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical
           protein Y59A8B.7 protein.
          Length = 316

 Score =  102 bits (245), Expect = 3e-22
 Identities = 42/81 (51%), Positives = 63/81 (77%)
 Frame = +3

Query: 27  VNVYSTNVTSENLSRHDMLAWVNDCLQSNFAKIEELCTGAAYCQFMDMLFPGSVPMKRIK 206
           VNVY+T  +++NLSRH+ML WVNDCLQ++F KIE+L TGA YC F D LFP S+ +K++K
Sbjct: 6   VNVYTTASSADNLSRHEMLMWVNDCLQAHFTKIEQLHTGAGYCLFTDFLFPDSIQLKKVK 65

Query: 207 FKTNLEHEYIQNFKILKLVLK 269
           + + LE +++ N+K+++   K
Sbjct: 66  WNSRLELDWLSNWKLVQTTWK 86


>AL031269-2|CAA20332.1|  299|Caenorhabditis elegans Hypothetical
           protein VW02B12L.3 protein.
          Length = 299

 Score = 80.2 bits (189), Expect = 2e-15
 Identities = 35/83 (42%), Positives = 57/83 (68%)
 Frame = +3

Query: 21  MAVNVYSTNVTSENLSRHDMLAWVNDCLQSNFAKIEELCTGAAYCQFMDMLFPGSVPMKR 200
           M VNV+ + VT++ LSR + +AWVN+ L+S+F K+EE+ +GAAYCQ   +LF  ++ +K+
Sbjct: 1   MVVNVFISAVTTDTLSRKEAVAWVNNLLKSHFTKVEEMASGAAYCQLTHLLF-NAINLKK 59

Query: 201 IKFKTNLEHEYIQNFKILKLVLK 269
           +KF    E + + N+K+L    K
Sbjct: 60  VKFNPRSEPDVLNNWKVLTTTWK 82


>Z50858-4|CAA90724.2|  156|Caenorhabditis elegans Hypothetical
           protein F44A6.4 protein.
          Length = 156

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 283 VHTHLFKTSFNILKFCIYSCSKFV 212
           V  HL+   +NIL  CI++C  F+
Sbjct: 70  VTAHLYTFPYNILTNCIFACEDFI 93


>AF039710-3|AAD32272.1|  347|Caenorhabditis elegans Serpentine
           receptor, class h protein100 protein.
          Length = 347

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 20/75 (26%), Positives = 32/75 (42%)
 Frame = +3

Query: 30  NVYSTNVTSENLSRHDMLAWVNDCLQSNFAKIEELCTGAAYCQFMDMLFPGSVPMKRIKF 209
           N YSTN +  NLS   + +W      ++F +I  L        F  +L    V MK +K+
Sbjct: 7   NYYSTNYSKCNLSESFLASWKGVAYPTDFIQIFSL--PLQILAFYIILTKTPVQMKSMKW 64

Query: 210 KTNLEHEYIQNFKIL 254
                H +   F ++
Sbjct: 65  PLFYNHLFCSIFDVI 79


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,833,377
Number of Sequences: 27780
Number of extensions: 370981
Number of successful extensions: 775
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)