Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00510
         (801 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g67270.1 68418.m08480 microtubule-associated EB1 family prote...    83   3e-16
At5g62500.1 68418.m07844 microtubule-associated EB1 family prote...    77   1e-14
At3g47690.1 68416.m05194 microtubule-associated EB1 family prote...    75   6e-14
At2g32070.1 68415.m03919 CCR4-NOT transcription complex protein,...    32   0.51 
At5g02930.1 68418.m00236 F-box family protein low similarity to ...    31   0.67 
At2g10460.1 68415.m01099 hypothetical protein includes At2g05890...    30   2.1  
At2g07630.1 68415.m00881 hypothetical protein                          29   4.7  
At1g52950.1 68414.m05988 replication protein-related low similar...    29   4.7  

>At5g67270.1 68418.m08480 microtubule-associated EB1 family protein
           similar to SP|Q9UPY8 Microtubule-associated protein
           RP/EB family member 3 (Protein EB3) {Homo sapiens};
           contains Pfam profiles PF00307: Calponin homology (CH)
           domain, PF03271: EB1 protein
          Length = 329

 Score = 82.6 bits (195), Expect = 3e-16
 Identities = 33/76 (43%), Positives = 52/76 (68%)
 Frame = +3

Query: 63  LSRHDMLAWVNDCLQSNFAKIEELCTGAAYCQFMDMLFPGSVPMKRIKFKTNLEHEYIQN 242
           + R ++LAW+N  LQ N +K+EE C+GA +CQ MD + PG+VPM ++ F    E+E IQN
Sbjct: 14  VGRSEILAWINSTLQLNLSKVEEACSGAVHCQLMDSVHPGTVPMHKVNFDAKSEYEMIQN 73

Query: 243 FKILKLVLKRWVWTRY 290
           +K+L+ V  +   T++
Sbjct: 74  YKVLQDVFNKLKITKH 89


>At5g62500.1 68418.m07844 microtubule-associated EB1 family protein
           similar to EBF3-S (Microtubule-associated protein) [Homo
           sapiens] GI:12751131; contains Pfam profiles PF00307:
           Calponin homology (CH) domain, PF03271: EB1 protein
          Length = 293

 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 30/70 (42%), Positives = 49/70 (70%)
 Frame = +3

Query: 63  LSRHDMLAWVNDCLQSNFAKIEELCTGAAYCQFMDMLFPGSVPMKRIKFKTNLEHEYIQN 242
           + R+++L+W+ND L  N ++IEE  +GA  CQ +DM FPG VPM ++ F+   E+E IQN
Sbjct: 14  VGRNEILSWINDRLHLNLSRIEEAASGAVQCQMLDMTFPGVVPMHKVNFEAKNEYEMIQN 73

Query: 243 FKILKLVLKR 272
           +K+++ V  +
Sbjct: 74  YKVMQEVFTK 83


>At3g47690.1 68416.m05194 microtubule-associated EB1 family protein
           similar to SP|Q9UPY8 Microtubule-associated protein
           RP/EB family member 3 (Protein EB3) {Homo sapiens};
           contains Pfam profile PF03271: EB1 protein
          Length = 276

 Score = 74.9 bits (176), Expect = 6e-14
 Identities = 29/70 (41%), Positives = 47/70 (67%)
 Frame = +3

Query: 63  LSRHDMLAWVNDCLQSNFAKIEELCTGAAYCQFMDMLFPGSVPMKRIKFKTNLEHEYIQN 242
           + R+++L W+ND L  N +++EE  +GA  CQ +DM FPG VPM ++ F    E++ IQN
Sbjct: 14  VGRNEILTWINDRLHLNLSRVEEAASGAVQCQMLDMTFPGVVPMHKVNFDAKNEYDMIQN 73

Query: 243 FKILKLVLKR 272
           +K+L+ V  +
Sbjct: 74  YKVLQDVFNK 83


>At2g32070.1 68415.m03919 CCR4-NOT transcription complex protein,
           putative similar to SWISS-PROT:Q60809 CCR4-NOT
           transcription complex, subunit 7 (CCR4-associated factor
           1, (CAF1) [Mus musculus]
          Length = 275

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
 Frame = +3

Query: 93  NDCLQSNFAKIEELCTGAAYCQFMDMLFPGSVPMKRIKFKTNLEHEY---IQNFKILKLV 263
           ND L+S  A I E+     +   MD  FPG V      FKTN E+ Y     N  ILK++
Sbjct: 17  NDNLESEMALIREVVDDFPFVA-MDTEFPGIVCRPVGTFKTNTEYHYETLKTNVNILKMI 75


>At5g02930.1 68418.m00236 F-box family protein low similarity to
           ribosomal RNA apurinic site specific lyase [Triticum
           aestivum] GI:6505722; contains F-box domain Pfam:PF00646
          Length = 469

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +3

Query: 63  LSRHDMLAWVNDCLQSNFAKIEELCTGAAYCQFMDMLFPGSVPMKRIKFKT 215
           L  HD+L  V   L++ F K+E+L  G    Q + +    S+P+  +K KT
Sbjct: 285 LDPHDLLVMVQTMLKT-FQKVEKLTLGVNLLQMLSLSKIPSLPLPMLKVKT 334


>At2g10460.1 68415.m01099 hypothetical protein includes At2g05890,
           At4g07450, At3g30630, At3g43100, At2g09960, At3g30550,
           At1g39430, At2g10460, At4g03640, At5g35250
          Length = 352

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 670 ILHQ*ACLLFDIINSIIGKNYQYLLC 747
           IL +   +L D+IN + GK +Q+LLC
Sbjct: 261 ILDRRPTVLLDVINGLKGKTFQFLLC 286


>At2g07630.1 68415.m00881 hypothetical protein 
          Length = 458

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +1

Query: 691 LLFDIINSIIGKNYQYLLC 747
           +L D I ++IGK YQYL+C
Sbjct: 355 ILPDSIKNLIGKTYQYLVC 373


>At1g52950.1 68414.m05988 replication protein-related low similarity
           to replication protein A1 GI:2258469 from (Oryza sativa)
          Length = 566

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +1

Query: 700 DIINSIIGKNYQYLLC 747
           D++ +IIGK YQ+L+C
Sbjct: 395 DVVKNIIGKTYQFLVC 410


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,352,792
Number of Sequences: 28952
Number of extensions: 326499
Number of successful extensions: 581
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)