Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00509
         (715 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    30   0.38 
SPCC584.12 |mug42||sequence orphan|Schizosaccharomyces pombe|chr...    28   1.5  
SPAC1002.19 |urg1||GTP cyclohydrolase II |Schizosaccharomyces po...    26   6.1  
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr...    26   6.1  
SPCC1442.05c |||conserved fungal protein|Schizosaccharomyces pom...    26   6.1  
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|...    26   6.1  
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    25   8.1  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   8.1  
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    25   8.1  

>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 13/23 (56%), Positives = 18/23 (78%)
 Frame = +2

Query: 500 LQTEILAEVFSVVNIHRRGKLGI 568
           L TEILA V+++V+ H+RG L I
Sbjct: 166 LSTEILARVWNLVDTHKRGALDI 188


>SPCC584.12 |mug42||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 115

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 21/55 (38%), Positives = 30/55 (54%)
 Frame = +2

Query: 416 LLHSNRLNKFFVMIFYTRTEFLKAELSGLQTEILAEVFSVVNIHRRGKLGISARK 580
           LLH N  NK F +IF   T F+   L   Q  +   V S+++++RR +  IS RK
Sbjct: 55  LLHHNAKNKQFPLIFV--TNFI-TSLPNFQFPLFFFV-SLLHLYRRPRNQISTRK 105


>SPAC1002.19 |urg1||GTP cyclohydrolase II |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 439

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -2

Query: 597 VLLIYPFRAEIPNFPLRWMFTTENTSANISVC-SPDSSALRNSV 469
           VL  YP ++ I  FP+ W   T      I+V  S ++   RN+V
Sbjct: 34  VLTTYPSQSRIDPFPMNWGAATAEERGPITVARSIETLPHRNAV 77


>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 904

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 151 ALLHTNAPDVLSFRSRRLRIYPTVYSAR*TLFGRVYSSN 267
           +L+ + A DV +  S    +   VY+A  ++FGR  SSN
Sbjct: 857 SLIFSEADDVETESSTNSSVLQKVYTATRSIFGRNKSSN 895


>SPCC1442.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 177

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 555 PLRWMFTTENTSANISVCSPDSS 487
           P RW+ T+ +T+A    C P +S
Sbjct: 98  PARWLITSLSTAATFMFCFPKTS 120


>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 834

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 8   RVGSQEAYYQFFLLHDVIPSPWKSIVNIC 94
           +VG+    Y FF+L    P P+ SI  +C
Sbjct: 492 QVGNAPPDYLFFILDKNSPEPYGSIKRVC 520


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 9   VWAHKKLTTSFFYYTMLFLHRGSQS*TSVKYVF 107
           +WA   L     YYT  F H+G  +  +V Y F
Sbjct: 236 IWALGVLFYKLCYYTTPFEHQGLAAIMNVSYAF 268


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +2

Query: 425 SNRLNKFFVMIFYTRTEFLKAELSGLQ 505
           S +L KFF   FY  TE   A L  LQ
Sbjct: 225 SEQLLKFFEFFFYAYTEETDAHLPALQ 251


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
           Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 456 YFIQEPNFSRQSCRDYKL 509
           Y++ +P F +QSC D KL
Sbjct: 798 YYVVDPGFVKQSCFDPKL 815


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,867,721
Number of Sequences: 5004
Number of extensions: 59082
Number of successful extensions: 149
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)