Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00509
         (715 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0039 - 687711-688607,692336-693113,693414-693501,693761-69...    29   2.8  
06_03_0907 - 25851673-25852368,25853531-25853585,25853973-258540...    28   6.4  
08_01_0304 - 2502760-2502774,2502844-2502921,2503035-2503103,250...    28   8.5  

>09_01_0039 -
           687711-688607,692336-693113,693414-693501,693761-694148,
           694176-694401,694527-694680,695073-695145
          Length = 867

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +2

Query: 125 PVCGIRTP-VHCYIRMHRTSYPLGHDDFVYTRPCTLRVRHFLEGCI-LVTSR 274
           P+ GI    +  Y+R+   + P+ H  FVY  P   +V H +  C  LVT R
Sbjct: 278 PMTGINDRYIDAYVRLS-VNDPMWHITFVYGEPSNAQVEHLVSPCSDLVTLR 328


>06_03_0907 -
           25851673-25852368,25853531-25853585,25853973-25854068,
           25854170-25854435
          Length = 370

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = +2

Query: 350 FIFVIKGAFYLVSASTVRLQLSLLHSNRLNKFFVMIFYT 466
           F+F+    F L+S++   L LS  HS+RLN F + + YT
Sbjct: 175 FVFLAGAMFCLLSSAACHL-LSC-HSHRLNLFLIRLDYT 211


>08_01_0304 -
           2502760-2502774,2502844-2502921,2503035-2503103,
           2503200-2503289,2503400-2503517,2505548-2505678,
           2505756-2506025,2507175-2507308,2507635-2508088
          Length = 452

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -2

Query: 156 QCTGVRIPQTGTNLSNEIRT*QMFTIDFHGE 64
           +CTGV I   G N   +I T      DFHGE
Sbjct: 159 RCTGVVIGWDGANKRAKILTAASVVCDFHGE 189


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,343,749
Number of Sequences: 37544
Number of extensions: 341378
Number of successful extensions: 673
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)