Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00509
         (715 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   2.9  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   2.9  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               22   5.0  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.0  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   6.6  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   6.6  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   6.6  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 594 LLIYPFRAEIPNFPLRWMFTTE 529
           L++ PF A       RW+FTT+
Sbjct: 96  LVVMPFSAIYEVLENRWLFTTD 117


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/35 (22%), Positives = 16/35 (45%)
 Frame = -2

Query: 600 CVLLIYPFRAEIPNFPLRWMFTTENTSANISVCSP 496
           C  ++  F+  I  F   W+  +   +  + VC+P
Sbjct: 119 CSKIVSAFKIAIDKFDRLWVLDSGLVNRTVPVCAP 153


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 6/20 (30%), Positives = 14/20 (70%)
 Frame = -3

Query: 119 ICLMKYVLNRCSRLTSTVKE 60
           +C++ Y++ RC  +T  +K+
Sbjct: 11  LCIVSYMMVRCDDITLCLKQ 30


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 341 CASFIFVIKGAFYLVSASTVRLQLSLLHSNRLNKFFVMI 457
           C    F+    FYL S S  ++ LS+     L+ FF+++
Sbjct: 255 CMGISFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLV 293


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 341 CASFIFVIKGAFYLVSASTVRLQLSLLHSNRLNKFFVMI 457
           C    F+    FYL S S  ++ LS+     L+ FF+++
Sbjct: 255 CMGISFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLV 293


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/37 (21%), Positives = 17/37 (45%)
 Frame = -2

Query: 606 DTCVLLIYPFRAEIPNFPLRWMFTTENTSANISVCSP 496
           + C  ++  F+  +  F   W+  +   + N  +CSP
Sbjct: 122 EDCSGIVSAFKIAVDKFDRLWVLDSGLVNNNQPMCSP 158


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 341 CASFIFVIKGAFYLVSASTVRLQLSLLHSNRLNKFFVMI 457
           C    F+    FYL S S  ++ LS+     L  FF+++
Sbjct: 251 CMGISFLTVLVFYLPSDSGEKVSLSISILLSLTVFFLLL 289


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 341 CASFIFVIKGAFYLVSASTVRLQLSLLHSNRLNKFFVMI 457
           C    F+    FYL S S  ++ LS+     L  FF+++
Sbjct: 247 CVGISFLSVLVFYLPSDSGEKVSLSISILLSLTVFFLLL 285


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,409
Number of Sequences: 438
Number of extensions: 4393
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)