Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00505
         (802 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1 |...    31   0.19 
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha...    28   1.8  
SPAC56E4.07 |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    27   3.1  
SPCC191.04c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        27   4.1  
SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    27   4.1  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    26   5.4  
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop...    25   9.5  
SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi...    25   9.5  
SPAC9E9.11 |plr1|plr|pyridoxal reductase |Schizosaccharomyces po...    25   9.5  

>SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 10/102 (9%)
 Frame = +1

Query: 472 SFSDFRCVHIFSNLRDLQG----LCYMSMSISMALGFLSLGVLQLNTGFRQDLC---TLT 630
           S +DF C+  F+NLR  +     LCY S+   M L ++ + V + +   RQ L    T++
Sbjct: 17  SGTDFECIVKFTNLRSSEDVNLLLCYASIHGEMYLDYVLVRVTEFDEVQRQGLLNKRTMS 76

Query: 631 GFVVYTWMIATFFWMNVI--CINVCRSVLNASRLAK-SDRKQ 747
           G V    + +++  +N +   I     V  AS L + S++KQ
Sbjct: 77  GLVHIPKVSSSYSVINTLNGMIGNLFGVKQASTLTEASEQKQ 118


>SPAC17H9.08 |||mitochondrial coenzyme A
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
 Frame = +3

Query: 537 HVYEHKYGTWILVIGSTATEYRV----PSRFMYIDRIRRVHLDD 656
           H+Y H YG   L  G TAT YRV      +F+  +++RRV + D
Sbjct: 68  HIY-HVYGLHGLYQGHTATLYRVFPYAGIKFVAYEQVRRVLIRD 110


>SPAC56E4.07 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 235

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +2

Query: 344 AMYKNGT-DSSSGIISIALVCFEPSLKANDI 433
           A+YK G   +  G I I  VC +P+L+ N +
Sbjct: 134 ALYKTGLLKNPKGFIHIHFVCVDPALQGNGV 164


>SPCC191.04c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 100

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = +3

Query: 492 CTH-IFQFKRPPRPMLHVYEH 551
           C+H + Q K PP P+ H Y H
Sbjct: 11  CSHRVIQAKHPPFPLFHSYFH 31


>SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 320

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -2

Query: 504 KYVYTAKVAKRNTTEINVSIPLVSMSLALSDGSKHTSAMEIIPELESVP 358
           KY +   +      ++ + IP +S SL L DGS       ++ +  S+P
Sbjct: 239 KYGFVVIIIVGELNDVELKIPAISHSLKLKDGSILVLRSSLLHQWYSLP 287


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -1

Query: 355 FVHRTETILIRIF--GENKIWSVLSGHLISIQD 263
           F+H   ++  R+F   E+  WS+  GH++ IQD
Sbjct: 797 FLHSGFSVGERVFISDEHGHWSLAKGHIVHIQD 829


>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
           pyrophosphate phosphatase fusion 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -1

Query: 319 FGENKIWSVLSGHLISIQDYIFNSNLPLLQFMLTIGSVPH 200
           FG    W  L G L S+    +  +LP LQF     ++PH
Sbjct: 543 FGVGLFWVYLVGKLRSLGVTKWLLSLPPLQFFYIKDTIPH 582


>SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase
           Hat1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 693 VYTNHVHPKECCYHPS 646
           V  N  H K+C YHPS
Sbjct: 18  VQVNEKHEKDCQYHPS 33


>SPAC9E9.11 |plr1|plr|pyridoxal reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 333

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 380 IISIALVCFEPSLKANDIETSGILTL 457
           ++ IA V  E SL + DIET+GI+ +
Sbjct: 166 VVPIAAVEVEYSLFSRDIETNGIMDI 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,565,607
Number of Sequences: 5004
Number of extensions: 79770
Number of successful extensions: 229
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)