Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00505
         (802 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38952| Best HMM Match : 7tm_2 (HMM E-Value=1.7e-21)                 36   0.051
SB_4689| Best HMM Match : Dicty_CTDC (HMM E-Value=5.8)                 35   0.088
SB_36244| Best HMM Match : 7tm_2 (HMM E-Value=1.2e-12)                 34   0.12 
SB_49500| Best HMM Match : Collagen (HMM E-Value=1.8e-07)              34   0.12 
SB_48924| Best HMM Match : 7tm_2 (HMM E-Value=1.5e-16)                 33   0.27 
SB_8158| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.27 
SB_32584| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.36 
SB_18788| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.62 
SB_11015| Best HMM Match : 7tm_2 (HMM E-Value=0.00048)                 32   0.62 
SB_45587| Best HMM Match : Somatomedin_B (HMM E-Value=1e-06)           31   1.1  
SB_39597| Best HMM Match : 7tm_2 (HMM E-Value=2.9e-13)                 31   1.4  
SB_37980| Best HMM Match : 7tm_2 (HMM E-Value=5.3e-13)                 30   2.5  
SB_36243| Best HMM Match : 7tm_2 (HMM E-Value=2.2e-09)                 30   2.5  
SB_50643| Best HMM Match : Phosphodiest (HMM E-Value=0)                29   3.3  
SB_48778| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_22282| Best HMM Match : 7tm_2 (HMM E-Value=9.5e-09)                 29   5.8  
SB_45619| Best HMM Match : M (HMM E-Value=0.01)                        28   7.7  

>SB_38952| Best HMM Match : 7tm_2 (HMM E-Value=1.7e-21)
          Length = 959

 Score = 35.5 bits (78), Expect = 0.051
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
 Frame = +1

Query: 499 IFSNLRDLQGLCYMSMSISMALGFLSLGVLQLNTGFRQDLCTLTGFVVYTWMIATFFWMN 678
           +FS LR   G+  +++SIS+ L      V    TG +   C     V++   +A+F WM+
Sbjct: 689 LFSELRTAPGVNLLNLSISILLAQFLFLVGSGQTGSKAG-CVFIAIVLHYAFLASFSWMS 747

Query: 679 VICINVCRSVLNASRLA-KSDR 741
           +I  +  R+   + + A +SD+
Sbjct: 748 IIAFDTWRAFSFSGQSAMRSDK 769


>SB_4689| Best HMM Match : Dicty_CTDC (HMM E-Value=5.8)
          Length = 530

 Score = 34.7 bits (76), Expect = 0.088
 Identities = 25/75 (33%), Positives = 33/75 (44%)
 Frame = -2

Query: 339 RQYSSGSSAKTKSGVS*VDTLFPFKIISSIAIFHCCSSC*PLALCRIYPVVKLLCHRDSI 160
           +QY S  S   KSG+      FP K  S++   HCC  C    LC      + LC   S 
Sbjct: 407 KQYISADSQCRKSGIY---LNFPGKFTSTVKGHHCCDVCAQSCLCDNDHCSQELC-LTST 462

Query: 159 ASRIQRFHNTITRIK 115
             +IQ+  N   +IK
Sbjct: 463 VDQIQQVLNNCDKIK 477


>SB_36244| Best HMM Match : 7tm_2 (HMM E-Value=1.2e-12)
          Length = 849

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 16/69 (23%), Positives = 39/69 (56%)
 Frame = +1

Query: 499 IFSNLRDLQGLCYMSMSISMALGFLSLGVLQLNTGFRQDLCTLTGFVVYTWMIATFFWMN 678
           +FS LR + G+  M++++S+ L  ++  +  +N   R   CT+   ++  + + +F W +
Sbjct: 407 LFSELRTIPGVNLMNLAVSILLAQVTW-LTGVNQTDRTLACTVVAAMLQYFYLVSFMWTS 465

Query: 679 VICINVCRS 705
           +I ++  R+
Sbjct: 466 IIAVDTWRA 474


>SB_49500| Best HMM Match : Collagen (HMM E-Value=1.8e-07)
          Length = 621

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 19/81 (23%), Positives = 38/81 (46%)
 Frame = +1

Query: 484 FRCVHIFSNLRDLQGLCYMSMSISMALGFLSLGVLQLNTGFRQDLCTLTGFVVYTWMIAT 663
           F C   F  LR+  G   + ++++ AL    +  L +     + LC +    ++ +++A 
Sbjct: 539 FVCHGYFPELRNFPGK--IQINLAAALLMFHVFFLMVGVNSVRGLCKVVAIGIHFFLLAA 596

Query: 664 FFWMNVICINVCRSVLNASRL 726
           F WM V+  +V R+  N   +
Sbjct: 597 FLWMAVMAYDVHRTFTNQGEM 617


>SB_48924| Best HMM Match : 7tm_2 (HMM E-Value=1.5e-16)
          Length = 736

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 22/85 (25%), Positives = 41/85 (48%)
 Frame = +1

Query: 499 IFSNLRDLQGLCYMSMSISMALGFLSLGVLQLNTGFRQDLCTLTGFVVYTWMIATFFWMN 678
           +F+ LR   G+  M++SI++ +  L + +  LN      LCT     +    +A F W++
Sbjct: 478 LFNELRTHPGIHLMNLSIALLMAQL-MWLTLLNQTHYPKLCTAIAVALQYLYLAAFTWIS 536

Query: 679 VICINVCRSVLNASRLAKSDRKQFL 753
           VI  +  ++  N   +AK    Q +
Sbjct: 537 VISFSTWKA-FNVFAVAKPVLSQLI 560


>SB_8158| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 395

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 21/94 (22%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
 Frame = +1

Query: 451 NINLCSVSFSDFRCVHIFSNLRDLQGLCYMSMSISMALG---FLSLGVLQLNTGFRQDLC 621
           ++++ S+SF       +F  LR + G+  M+++ S+ +    +L  G   L   F    C
Sbjct: 118 SLSVISMSFL-LLTYRLFKELRTIPGINMMNLAASLLMAQLLWLVSGAFTLGPVF----C 172

Query: 622 TLTGFVVYTWMIATFFWMNVICINVCRSVLNASR 723
           T+T   ++   + +F W ++I  +  ++  N +R
Sbjct: 173 TITACFLHYLFLVSFLWTSIIAYDTWKAFSNTTR 206


>SB_32584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 665

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 18/66 (27%), Positives = 34/66 (51%)
 Frame = +1

Query: 499 IFSNLRDLQGLCYMSMSISMALGFLSLGVLQLNTGFRQDLCTLTGFVVYTWMIATFFWMN 678
           +   LR+L G   +S++I+M L  L   ++  N    + LC      ++  +++ F WMN
Sbjct: 435 VLPELRNLPGRVVLSLAITMLLYHLLYFLV--NQSDTRALCVAVAVSLHFALLSAFCWMN 492

Query: 679 VICINV 696
           V+  +V
Sbjct: 493 VLAFDV 498


>SB_18788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 820

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 22/84 (26%), Positives = 41/84 (48%)
 Frame = +1

Query: 511 LRDLQGLCYMSMSISMALGFLSLGVLQLNTGFRQDLCTLTGFVVYTWMIATFFWMNVICI 690
           +R++ G   MS  ++  LG+    VL      R+ LC     V++ + +A+F WM V+  
Sbjct: 495 MRNIPGKNLMSF-LAALLGYQIFYVLIGYNNIRE-LCIAVAIVIHYFFLASFGWMAVMAY 552

Query: 691 NVCRSVLNASRLAKSDRKQFLWYS 762
           +V ++   +  +      +FL YS
Sbjct: 553 DVMKT-FTSKGVRSCSNNRFLKYS 575


>SB_11015| Best HMM Match : 7tm_2 (HMM E-Value=0.00048)
          Length = 283

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 19/87 (21%), Positives = 40/87 (45%)
 Frame = +1

Query: 502 FSNLRDLQGLCYMSMSISMALGFLSLGVLQLNTGFRQDLCTLTGFVVYTWMIATFFWMNV 681
           F  LR+L G   M++S+++    +   ++ ++T     LC      ++ ++   F WM V
Sbjct: 127 FPELRNLPGKIQMNLSVALLAFHVLFFMVAMSTSGA--LCKAIAIGIHYFLFVGFAWMAV 184

Query: 682 ICINVCRSVLNASRLAKSDRKQFLWYS 762
           +  +V R+    +      ++  L YS
Sbjct: 185 MAYDVHRTFTGQTEAILQPQRSMLVYS 211


>SB_45587| Best HMM Match : Somatomedin_B (HMM E-Value=1e-06)
          Length = 1003

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 19/76 (25%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
 Frame = +1

Query: 499  IFSNLRDLQGLCYMSMSISMALGFLS--LGVLQLNTGFRQDLCTLTGFVVYTWMIATFFW 672
            +FS LR + G+  M++++S  L  ++   GV Q +T      CT+   ++  + + +F W
Sbjct: 855  LFSELRTIPGVNLMNLALSTLLAQVTWLTGVNQTDTPIT---CTVVAALLQYFYLVSFTW 911

Query: 673  MNVICINVCRSVLNAS 720
             ++I  +  R+  + S
Sbjct: 912  TSIIAYDTWRAFSSKS 927


>SB_39597| Best HMM Match : 7tm_2 (HMM E-Value=2.9e-13)
          Length = 1052

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 23/88 (26%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
 Frame = +1

Query: 499  IFSNLRDLQGLCYMSMSISMALG--FLSLGVLQLNTGFRQDLCTLTGFVVYTWMIATFFW 672
            +FS LR   G   M++S ++ L   F   G  Q++    +  CT+   +++ + +A+F W
Sbjct: 778  LFSELRTTPGKNLMNLSTAILLSQIFWLSGSGQVHD---RTACTVVAILLHYFFLASFIW 834

Query: 673  MNVICINVCRSVLNAS-RLAKSDRKQFL 753
              +I  +  R+  + S R AK+ +++ L
Sbjct: 835  TAIIAWDTWRAFSHRSHRSAKTMKRENL 862


>SB_37980| Best HMM Match : 7tm_2 (HMM E-Value=5.3e-13)
          Length = 1297

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 15/80 (18%), Positives = 40/80 (50%)
 Frame = +1

Query: 499  IFSNLRDLQGLCYMSMSISMALGFLSLGVLQLNTGFRQDLCTLTGFVVYTWMIATFFWMN 678
            +F  LR   G+  M++++S+ L  ++  +  +N   +   CT+   ++  + + +F W +
Sbjct: 769  LFRQLRTTPGVNLMNLALSILLAQVTW-LAGINQTDQPITCTVVAALIQFFYLVSFMWTS 827

Query: 679  VICINVCRSVLNASRLAKSD 738
            +I  +  R+  + +    S+
Sbjct: 828  IIAFDTWRAFSSKTHFRGSE 847


>SB_36243| Best HMM Match : 7tm_2 (HMM E-Value=2.2e-09)
          Length = 1338

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
 Frame = +1

Query: 499  IFSNLRDLQGLCYMSMSISMALGFLSLGVLQLNTGFRQDLCTLTGFVVYTWMIATFFWMN 678
            IF+ LR   G+  M++S +  L  + L V          LC +   ++  + +A F W +
Sbjct: 955  IFAELRTAPGINLMNLSTATLLAQI-LWVAGSGATGNPRLCAILAALMQYFFLACFVWAS 1013

Query: 679  VICINVCRSV-LNASRLAKSDRK 744
            VI  +  R+    + RL  S  K
Sbjct: 1014 VIAFDTWRAFSAGSQRLHSSHSK 1036


>SB_50643| Best HMM Match : Phosphodiest (HMM E-Value=0)
          Length = 471

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 175 PSGQHCFPNTTIPQHNNTNKVISFM 101
           P  +HC+PN TIP      K++S++
Sbjct: 181 PPYEHCYPNYTIPFSKRIEKIMSWL 205


>SB_48778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1165

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 18/84 (21%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
 Frame = +1

Query: 499  IFSNLRDLQGLCYMSMSISMALGFLSLGVLQLNTGFRQDLCTLTGFVVYTWMIATFFWMN 678
            +FS LR + G+  M++  S  L  ++  +  +N   +   CT+    +  + + +F W +
Sbjct: 828  LFSELRTIPGVNLMNLGFSTLLAQVTW-LTGVNQTDKPVTCTIVAASLQYFYLVSFMWTS 886

Query: 679  VICINVCRSV-LNASRLAKSDRKQ 747
            +I  +  R+   N  R +   R +
Sbjct: 887  IIAYDTWRAFSSNGHRASPGSRSE 910


>SB_22282| Best HMM Match : 7tm_2 (HMM E-Value=9.5e-09)
          Length = 712

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 19/103 (18%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
 Frame = +1

Query: 466 SVSF-SDFRCVHIFSNLRDLQGLCYMS-MSISMALGFLSLGVLQLNTGFRQDLCTLTGFV 639
           +VSF S+   + +++ ++ L+ +  ++ MS   AL    +    +    ++++C +    
Sbjct: 437 AVSFVSEVLLLAVYAEMKQLRNVPGLNLMSFVTALIMYQVIYQTIGLDVKEEICIVIATT 496

Query: 640 VYTWMIATFFWMNVICINVCRSVLNASRLAKSDRKQFLWYSVT 768
           ++ +++A F W  ++  +  ++    S        +FL Y VT
Sbjct: 497 LHYFLLAAFAWTGIMAYDTKKTFSTESIRHDYSAGRFLRYCVT 539


>SB_45619| Best HMM Match : M (HMM E-Value=0.01)
          Length = 1315

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
 Frame = -1

Query: 421 LKRWFEAYKRNGDNSRTRVCTV--FVHRTETILIRIFGENKI-WSVLSGHLISIQDYIF- 254
           LK   +A K   + ++ RV  +   + R++  L +   EN++ W  +  +L  I DYI  
Sbjct: 607 LKEEHDATKEKMEMTQMRVSQLEESLRRSQYALEKAAEENQVGWQKIDDNLDKIVDYICK 666

Query: 253 NSNLPLLQFMLTIGSVPHLPRGEIIMPSGQHCFPNTTIPQHNNTNK 116
            S++P L  +L  GSV H  +  I    G+  + N  +  H  + K
Sbjct: 667 ESDIP-LPSLLGSGSVRHDSQQGIAEMIGKLRWVNEELKVHLTSEK 711


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,036,529
Number of Sequences: 59808
Number of extensions: 596563
Number of successful extensions: 1517
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1514
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)