Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00505
         (802 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   2.5  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    23   4.4  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   4.4  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   5.8  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   5.8  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   7.6  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 327 MSIVSVRCTKTVQTLVRELSPLRLYASNHRLRPTTLRQAE 446
           M+  S +   T+QTL  ++SP R     +RL    L Q++
Sbjct: 398 MATTSPQSQSTIQTLRPQVSPDRTSPMEYRLYNPALIQSQ 437


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/39 (23%), Positives = 19/39 (48%)
 Frame = +2

Query: 185 FTTG*MRHRANGQHELQQWKIAIEDIILNGNKVSTQDTP 301
           F  G  ++    +H L  + + ++ +I+  NK+   D P
Sbjct: 123 FEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDMTDPP 161


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 35  SAKCMLQHIARL*LSLAFKQKKHEGNYFIRVIVLWNRCIREAMLS 169
           SA   L H     L + F  ++H GN+ I+V   +  C+   +LS
Sbjct: 190 SASTTLSHAEYSMLLVYFHLQRHMGNFLIQV---YGPCVLLVVLS 231


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -1

Query: 331 LIRIFGENKIWSVLSGHLIS 272
           LI IFGE+   S +S HLIS
Sbjct: 246 LITIFGESAGGSSVSLHLIS 265


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -1

Query: 331 LIRIFGENKIWSVLSGHLIS 272
           LI IFGE+   S +S HLIS
Sbjct: 246 LITIFGESAGGSSVSLHLIS 265


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 63  PDFDYRSHSNKKNMKEITLFVL 128
           PD +YR+   ++ MK I  F L
Sbjct: 199 PDLNYRNSDVREEMKNIMKFWL 220


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,946
Number of Sequences: 438
Number of extensions: 5516
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)