Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00505
(802 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g23630.1 68418.m02771 ATPase E1-E2 type family protein / halo... 34 0.096
At5g61730.1 68418.m07746 ABC transporter family protein contains... 32 0.39
At4g26240.1 68417.m03777 expressed protein 29 2.7
At5g25050.1 68418.m02969 integral membrane transporter family pr... 29 4.7
At3g47730.1 68416.m05200 ABC transporter family protein AbcA, Di... 29 4.7
At5g25040.1 68418.m02967 integral membrane transporter family pr... 28 6.3
At3g29800.1 68416.m03792 AAA-type ATPase family contains Pfam pr... 28 8.3
At2g22340.1 68415.m02651 hypothetical protein 28 8.3
At1g69935.1 68414.m08048 expressed protein 28 8.3
>At5g23630.1 68418.m02771 ATPase E1-E2 type family protein /
haloacid dehalogenase-like hydrolase familiy protein
similar to SP|O14072 Cation-transporting ATPase 4 (EC
3.6.3.-) {Schizosaccharomyces pombe}; contains InterPro
accession IPR001757: ATPase, E1-E2 type; contains Pfam
profile PF00702: haloacid dehalogenase-like hydrolase
Length = 1179
Score = 34.3 bits (75), Expect = 0.096
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +2
Query: 260 IILNGNKVSTQDTPDFVFA-EDPDEYCLGAMYKNGTDSSSGIISIALVCFEPSLKANDIE 436
++ G K+ Q +PD F+ + PD CL + + G ++S G + ++ + AN E
Sbjct: 343 VLFGGTKI-LQHSPDKSFSLKTPDGGCLAVVLRTGFETSQGKLMRTILFSTERVTANSWE 401
Query: 437 TSGILTLISVVF 472
SG+ L VVF
Sbjct: 402 -SGLFILFLVVF 412
>At5g61730.1 68418.m07746 ABC transporter family protein contains
Pfam profile: PF00005 ABC transporter
Length = 940
Score = 32.3 bits (70), Expect = 0.39
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 610 QDLCTLTGFVVYTWMIATFFWMNVICINVCRSVLNASRLAKS 735
+ C +T +Y W++ TFF+ V+ + + NAS + KS
Sbjct: 414 ESTCVITTNKIYIWLVGTFFFWFVLALYFDNIIPNASGVRKS 455
>At4g26240.1 68417.m03777 expressed protein
Length = 198
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +1
Query: 646 TWMIATFFWMNVICINVCRSVLNASRLAKSDRKQFLWYSVTRGAVL 783
+WM+ + W I I C + R K+D +++ WYS G+ L
Sbjct: 97 SWMVISAEW---IAIMACSLSIVGLRDKKNDHRRWFWYSCVVGSAL 139
>At5g25050.1 68418.m02969 integral membrane transporter family
protein similar to biopterin transporter (GI:3377706)
[Leishmania mexicana]; contains 7 transmembrane domains;
contains Pfam PF03092: BT1 family; contains TIGRFAMS
TIGR00788: folate/biopterin transporter
Length = 499
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 517 DLQGLCYMSMSISMALGFLSLGVL 588
D+Q LC +S SI LGF G+L
Sbjct: 178 DMQSLCSLSSSIGALLGFFMSGIL 201
>At3g47730.1 68416.m05200 ABC transporter family protein AbcA,
Dictyostelium discoideum, DDU66526
Length = 983
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 619 CTLTGFVVYTWMIATFFWMNVICINVCRSVLNASRLAKS 735
C LT +Y W++ TFF V+ + NAS + KS
Sbjct: 415 CVLTINDIYLWLLGTFFLWFVLALYFDNITPNASGVRKS 453
>At5g25040.1 68418.m02967 integral membrane transporter family
protein similar to biopterin transporter (GI:3377706)
[Leishmania mexicana]; contains Pfam PF03092: BT1
family; contains TIGRFAMS TIGR00788: folate/biopterin
transporter; Interpro IPR001991/ PR00173
Sodium:dicarboxylater symporter family
Length = 492
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 517 DLQGLCYMSMSISMALGFLSLGVL 588
D+Q LC +S SI LGF G+L
Sbjct: 179 DMQSLCSLSYSIGELLGFFMSGIL 202
>At3g29800.1 68416.m03792 AAA-type ATPase family contains Pfam
profile: ATPase family PF00004
Length = 440
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/64 (23%), Positives = 29/64 (45%)
Frame = +3
Query: 534 LHVYEHKYGTWILVIGSTATEYRVPSRFMYIDRIRRVHLDDSNILLDERDLYKRMSFSAQ 713
+H Y H TW I + + + + ++R +DD ++ + + D YKR+
Sbjct: 143 MHTYSHCCDTWETKILDHHSSFET---IVMKEDLKRRLIDDIDLFISKEDFYKRVGRHWM 199
Query: 714 RFSL 725
R+ L
Sbjct: 200 RYYL 203
>At2g22340.1 68415.m02651 hypothetical protein
Length = 358
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +1
Query: 568 FLSLGVLQLNTGF-RQDLCTLTG-FVVYTWMIATFFWMNVI 684
+ ++G +L Q L TL G FVV W I+ FFW++VI
Sbjct: 14 YATVGFQELTLSIPNQTLVTLLGPFVV--WFISHFFWISVI 52
>At1g69935.1 68414.m08048 expressed protein
Length = 192
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +1
Query: 550 ISMAL-GFLSLGVLQLNTGFRQDLCTLTGFVVYTWMIATFFW 672
+S A+ G L LG L + F + +C L G V ++ FW
Sbjct: 132 VSFAVDGILLLGSLSITRAFLEVICNLGGTVFTVILLIRLFW 173
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,427,781
Number of Sequences: 28952
Number of extensions: 409973
Number of successful extensions: 1234
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1234
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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