Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00504
         (718 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450 ...    25   0.61 
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    23   2.5  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     22   4.3  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    22   5.7  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    21   7.6  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    21   7.6  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   7.6  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   7.6  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    21   7.6  

>AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 491

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 347 IIREIVNATNAETERDIEDLIQWSH 273
           I++E +   N ET+R +EDL   SH
Sbjct: 138 ILQEFIQIFNEETKRLVEDLEAESH 162


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +2

Query: 221 LAGRMQYLMR-PMAQRNNYGSTGS 289
           ++ R+++ M  PMA  N+YGS G+
Sbjct: 83  ISNRIRHEMATPMATMNSYGSVGT 106


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +1

Query: 22  SKKLYAGPVLSDTEPFRSKLMKEKLGIENWNKEYHNYTMI 141
           S KL + P+LS      +K+   +  + N   EY   T +
Sbjct: 469 SMKLQSFPLLSQRHQIDAKMFCNESSVSNCENEYCECTHV 508


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = -3

Query: 281 WSHNCSFEPWAA*GTAFCRP 222
           W  +C F  W   G A C P
Sbjct: 505 WYLDCGFGRWRETGEAACDP 524


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 321 GGVHDFTDNPDKPWK 365
           GGV D    P+K WK
Sbjct: 73  GGVKDLRITPNKLWK 87


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 321 GGVHDFTDNPDKPWK 365
           GGV D    P+K WK
Sbjct: 73  GGVKDLRITPNKLWK 87


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 321 GGVHDFTDNPDKPWK 365
           GGV D    P+K WK
Sbjct: 73  GGVKDLRITPNKLWK 87


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 321 GGVHDFTDNPDKPWK 365
           GGV D    P+K WK
Sbjct: 73  GGVKDLRITPNKLWK 87


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 321 GGVHDFTDNPDKPWK 365
           GGV D    P+K WK
Sbjct: 73  GGVKDLRITPNKLWK 87


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,822
Number of Sequences: 336
Number of extensions: 3333
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19051215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)