Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00504
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase |Schizosa...    27   2.7  
SPAPYUG7.02c |sin1||stress activated MAP kinase interacting prot...    27   3.5  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    26   4.7  
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|...    26   4.7  
SPAC16E8.14c |||methyltransferase |Schizosaccharomyces pombe|chr...    26   6.2  
SPAC664.07c |rad9||checkpoint clamp complex protein Rad9|Schizos...    26   6.2  
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom...    26   6.2  

>SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -1

Query: 247 HEVLHSAGQQYRSLHLDPLHRTVLHQPKLQCH*ASKSLYNYDI 119
           H +L +A   Y     D L +  LH   L  H A K +  YD+
Sbjct: 321 HLLLRAANIAYHYFSFDFLQKASLHSSTLPIHLACKKIPFYDV 363


>SPAPYUG7.02c |sin1||stress activated MAP kinase interacting protein
           Sin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +2

Query: 473 LSYQHITVVDSQMISNEKWNDRVISDD*LLTKTIPALD 586
           ++ Q +  ++ +  +   WN R++ DD  L +  PALD
Sbjct: 328 VNQQLVPPIEDEAQNPNYWNLRIVEDDGELDEDFPALD 365


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = -1

Query: 118 PYSSSRCQVSLSLAST*TARCRIERVQRTVS 26
           PYSSSR   S SLAS+ T      +   TVS
Sbjct: 317 PYSSSRPSASASLASSPTRSAFRPKTSETVS 347


>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
 Frame = +1

Query: 61  EPFRSKLMK-----EKLGIENWNKEYHNYTMIW---KPNGIEVLVDGEQFGVVDPGEGF 213
           E +R KLMK     +  GI NW K+Y  + + +      G+EV+V     G+  P   F
Sbjct: 120 EKWRKKLMKSIANRKAKGISNWGKKYSMFLLPFFTVLREGLEVVVFVGGVGLETPATAF 178


>SPAC16E8.14c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 94  LGIENWNKEYHNYTMIWKPNGIEVLVD 174
           +G++NW  E + Y +IW    +  L D
Sbjct: 109 VGLQNWTPEKNRYGLIWNQWCLSHLTD 135


>SPAC664.07c |rad9||checkpoint clamp complex protein
           Rad9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +1

Query: 58  TEPFRSKLMKEKLGIENWNKEY-HNYTMIWKPNGIEVLVDGEQFGVVDPGEG 210
           TE    + ++E++ + ++ +E  HN  ++ +P    V +DG++F  V   EG
Sbjct: 193 TEELTIQPLQERVLLTSFTEEVVHNRDILKQPTQTTVSIDGKEFERVALNEG 244


>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 535

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
 Frame = +3

Query: 225 PAECSTSCGPWLKGTIMAPLDQIFYISLGLRVG-----GVHDFTDNPDKPWK 365
           P   S S  P ++G I+    Q+F I+LG+ +      G H +T +P+  W+
Sbjct: 132 PGYQSESSPPHIRGAIVTTY-QLF-ITLGIFIAACINMGTHKYTTHPEAQWR 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,807,928
Number of Sequences: 5004
Number of extensions: 57165
Number of successful extensions: 149
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)