Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00504
(718 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0065 + 19395599-19395748,19396079-19396168,19396255-193963... 33 0.17
04_04_0689 - 27292271-27292709,27293717-27293856,27294572-272946... 33 0.30
08_01_0869 + 8487518-8487697,8487792-8488127,8488211-8488410,848... 32 0.40
04_04_1068 + 30552935-30553234,30553424-30553623,30553738-30554122 32 0.40
04_04_1069 - 30554565-30555021,30556833-30557026,30557182-30557496 30 2.1
06_03_1252 + 28753584-28753883,28754693-28754886,28755192-28755597 29 2.8
04_04_1063 - 30507734-30508127,30508248-30508447,30508559-30508846 29 3.7
01_07_0177 - 41776168-41776314,41776395-41776456,41777029-417771... 29 3.7
06_03_1253 + 28761311-28761598,28761689-28761882,28762327-28762711 29 4.9
09_01_0091 + 1298829-1298898,1299461-1299535,1299642-1299799,130... 28 8.5
08_02_0639 + 19625534-19625824,19626381-19627126,19627522-19628011 28 8.5
>02_04_0065 +
19395599-19395748,19396079-19396168,19396255-19396329,
19396405-19396455,19404574-19404653,19404746-19404826,
19405048-19405207
Length = 228
Score = 33.5 bits (73), Expect = 0.17
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +3
Query: 174 WRTVRCSGSR*RLLYCWPAECSTSCGPWLKGTIMAPLDQIFYI 302
W+ G +L CW C C P L I+ LDQIF I
Sbjct: 42 WKACGALGVGFSVLLCWCGSCCLICPPELADRILHALDQIFSI 84
>04_04_0689 -
27292271-27292709,27293717-27293856,27294572-27294664,
27295614-27296012,27296258-27296392,27296482-27296835
Length = 519
Score = 32.7 bits (71), Expect = 0.30
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = +1
Query: 118 EYHNYTMIWKPNGIEVLVDGEQFGVVDPGEGFYTVGRQNAVPHAAHGSKEQL 273
+ + TM+W P G+ VD ++ G++ G G+Y+ N V +G+ +L
Sbjct: 449 DMQDVTMLWLPGGVTAYVDVDKDGILCIGVGWYSDEGINMVMERDYGTDGKL 500
>08_01_0869 +
8487518-8487697,8487792-8488127,8488211-8488410,
8488586-8488973
Length = 367
Score = 32.3 bits (70), Expect = 0.40
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1
Query: 115 KEYHNYTMIWKPNGIEVLVDG 177
+++H YT+IW P I +LVDG
Sbjct: 224 EDFHTYTIIWNPQMILILVDG 244
>04_04_1068 + 30552935-30553234,30553424-30553623,30553738-30554122
Length = 294
Score = 32.3 bits (70), Expect = 0.40
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +1
Query: 118 EYHNYTMIWKPNGIEVLVDGE 180
+YH Y+++W P I +LVDG+
Sbjct: 153 DYHTYSIVWNPKRILILVDGK 173
>04_04_1069 - 30554565-30555021,30556833-30557026,30557182-30557496
Length = 321
Score = 29.9 bits (64), Expect = 2.1
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 118 EYHNYTMIWKPNGIEVLVDGE 180
++HNYT++W P I VDG+
Sbjct: 156 DFHNYTILWNPLNIIFSVDGK 176
>06_03_1252 + 28753584-28753883,28754693-28754886,28755192-28755597
Length = 299
Score = 29.5 bits (63), Expect = 2.8
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +1
Query: 118 EYHNYTMIWKPNGIEVLVDGEQFGVVDPGEGF 213
++H Y+++W P+ I + +DG V E +
Sbjct: 151 DFHTYSILWNPHNIILYIDGTPIRVFKNNEAY 182
>04_04_1063 - 30507734-30508127,30508248-30508447,30508559-30508846
Length = 293
Score = 29.1 bits (62), Expect = 3.7
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +1
Query: 115 KEYHNYTMIWKPNGIEVLVD 174
+++H Y++IW P+ I +LVD
Sbjct: 148 QDFHTYSVIWNPDEILILVD 167
>01_07_0177 -
41776168-41776314,41776395-41776456,41777029-41777191,
41777278-41777375,41777911-41777992,41778391-41778512,
41778645-41778722,41778873-41779026,41779629-41779767,
41780453-41780820
Length = 470
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = +3
Query: 333 DFTDNPDKPWKNRNSKAMLAF--WNDRTNWLPTW 428
D DNP K W NR+ K + + + + N P W
Sbjct: 407 DLVDNPGKWWDNRSDKPSIKYPDFKHKENGTPLW 440
>06_03_1253 + 28761311-28761598,28761689-28761882,28762327-28762711
Length = 288
Score = 28.7 bits (61), Expect = 4.9
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +1
Query: 115 KEYHNYTMIWKPNGIEVLVDG 177
K++H Y+++W P+ I VDG
Sbjct: 146 KDFHTYSVLWNPSHILFYVDG 166
>09_01_0091 +
1298829-1298898,1299461-1299535,1299642-1299799,
1300629-1300979
Length = 217
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -3
Query: 209 PSPGSTTPNCSPSTKTSMPLGFQIIV 132
P PG TTP+ PS++ S P+ F I+V
Sbjct: 163 PPPGLTTPSLPPSSEKS-PVTFPILV 187
>08_02_0639 + 19625534-19625824,19626381-19627126,19627522-19628011
Length = 508
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -2
Query: 390 PALLCCSYSSRAYPDYP*NRER 325
P LLCC S Y YP +RER
Sbjct: 423 PMLLCCFIYSLLYQTYPRDRER 444
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,688,722
Number of Sequences: 37544
Number of extensions: 357000
Number of successful extensions: 924
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -