Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00504
         (718 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30882| Best HMM Match : DUF1694 (HMM E-Value=4.8)                   30   2.2  
SB_26513| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_40817| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.6e-36)       29   3.8  
SB_50822| Best HMM Match : 6PGD (HMM E-Value=3.7e-22)                  29   3.8  
SB_20665| Best HMM Match : 7tm_3 (HMM E-Value=1.8e-10)                 29   3.8  
SB_53246| Best HMM Match : AMP-binding (HMM E-Value=7.8e-37)           28   6.6  
SB_16214| Best HMM Match : AMP-binding (HMM E-Value=0)                 28   6.6  

>SB_30882| Best HMM Match : DUF1694 (HMM E-Value=4.8)
          Length = 172

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +1

Query: 91  KLGIENWNKEYHNYTMIWK 147
           KLGI+  N E++NY ++WK
Sbjct: 28  KLGIQGSNNEHNNYLLLWK 46


>SB_26513| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1460

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +1

Query: 1   PRGNAVFSK-KLYAGPVLSDTEPFRSKLMKEKLGIENWNKEYHN 129
           PR   ++ K K+YAG      E  RS  +  KL  + W+ EY N
Sbjct: 375 PRFKPMYCKDKIYAGATEFSFEELRSARLLTKLANKAWSTEYSN 418


>SB_40817| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.6e-36)
          Length = 888

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
 Frame = +1

Query: 61  EPFRSKLMKEKLGIENWNKEYHNYTMIWKPNGIEVLVDGE--QF---GVVDPGEGFYTVG 225
           +PF   L++    ++ W +++H   +   PNGI+V  +    QF   GVV  G   Y V 
Sbjct: 395 KPFIEVLLRITEQVK-WTRDHHETHVTTLPNGIKVASEESFGQFSTVGVVIDGGSRYEVD 453

Query: 226 RQNAVPH 246
             N V H
Sbjct: 454 HPNGVTH 460


>SB_50822| Best HMM Match : 6PGD (HMM E-Value=3.7e-22)
          Length = 122

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 25  KKLYAGPVLSDTEPFRSKLMKEKLGIENWNKEYHNYTMIWK 147
           K LYA  ++S  + F   LM+E   + NW   Y    ++W+
Sbjct: 44  KALYASKIVSYAQGFM--LMREAAKVFNWKLNYGGIALMWR 82


>SB_20665| Best HMM Match : 7tm_3 (HMM E-Value=1.8e-10)
          Length = 1514

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 330 HDFTDNPDKPWKNRNSKAMLAFWNDRTNWLPTWYDA 437
           HD+ DNPD  WK    +++       T +  T Y+A
Sbjct: 249 HDYLDNPDIWWKETKERSLHLVPKQTTEFYSTRYNA 284


>SB_53246| Best HMM Match : AMP-binding (HMM E-Value=7.8e-37)
          Length = 497

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +3

Query: 18  LQQETVRWTRSIRHRAVQVEANERETWHRELE*GIS*LYNDL 143
           L Q+ V   + +R +AV  + + RET   +LE G+S L +D+
Sbjct: 52  LSQDKVGQMKDLRVQAVVFDPDMRETQRMQLEKGVSQLLSDV 93


>SB_16214| Best HMM Match : AMP-binding (HMM E-Value=0)
          Length = 549

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +3

Query: 18  LQQETVRWTRSIRHRAVQVEANERETWHRELE*GIS*LYNDL 143
           L Q+ V   + +R +AV  + + RET   +LE G+S L +D+
Sbjct: 82  LSQDKVGQMKDLRVQAVVFDPDMRETQRMQLEKGVSQLLSDV 123


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,545,259
Number of Sequences: 59808
Number of extensions: 422452
Number of successful extensions: 1230
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1229
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)