Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00504
(718 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 24 1.7
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 24 1.7
AY127579-1|AAN02286.1| 405|Apis mellifera venom protease precur... 24 1.7
AF274024-1|AAF90150.1| 232|Apis mellifera tetraspanin F139 prot... 24 1.7
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.8
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.8
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.8
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.8
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.8
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.8
DQ069332-1|AAZ32217.1| 296|Apis mellifera RNA polymerase II lar... 21 8.8
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 8.8
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 8.8
DQ013068-1|AAY81956.1| 931|Apis mellifera dusty protein kinase ... 21 8.8
DQ013067-1|AAY81955.1| 969|Apis mellifera dusty protein kinase ... 21 8.8
AY898652-1|AAX83121.1| 349|Apis mellifera AKH receptor protein. 21 8.8
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 23.8 bits (49), Expect = 1.7
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -3
Query: 590 KYLEPELFLLIVSRHLLHDHSTFHCLSFESQPP*YVDSLKCINSDVI 450
K+ + EL L +S L D ++C S + P + ++ SDV+
Sbjct: 423 KFFDEELILGELSEKLREDVINYNCRSLVASVPFFANADSNFVSDVV 469
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 23.8 bits (49), Expect = 1.7
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -3
Query: 590 KYLEPELFLLIVSRHLLHDHSTFHCLSFESQPP*YVDSLKCINSDVI 450
K+ + EL L +S L D ++C S + P + ++ SDV+
Sbjct: 391 KFFDEELILGELSEKLREDVINYNCRSLVASVPFFANADSNFVSDVV 437
>AY127579-1|AAN02286.1| 405|Apis mellifera venom protease precursor
protein.
Length = 405
Score = 23.8 bits (49), Expect = 1.7
Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = -1
Query: 136 LYN--YDIPYSSSRCQVSLSLAST*TARCRIERVQRTVSC 23
+YN Y +PYS S+C +++ +C + +C
Sbjct: 56 IYNPRYPLPYSGSKCTWTITSYHRINLKCSLVEFSENKNC 95
>AF274024-1|AAF90150.1| 232|Apis mellifera tetraspanin F139
protein.
Length = 232
Score = 23.8 bits (49), Expect = 1.7
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 285 DQIFYISLGLRVGGVHDFTDNPDKP 359
D I +I L+ GVH +D DKP
Sbjct: 134 DFIDFIQKNLQCCGVHSLSDYNDKP 158
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.8
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +3
Query: 321 GGVHDFTDNPDKPWK 365
GGV D P+K WK
Sbjct: 56 GGVKDLRITPNKLWK 70
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.8
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +3
Query: 321 GGVHDFTDNPDKPWK 365
GGV D P+K WK
Sbjct: 56 GGVKDLRITPNKLWK 70
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.8
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +3
Query: 321 GGVHDFTDNPDKPWK 365
GGV D P+K WK
Sbjct: 56 GGVKDLRITPNKLWK 70
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.8
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +3
Query: 321 GGVHDFTDNPDKPWK 365
GGV D P+K WK
Sbjct: 56 GGVKDLRITPNKLWK 70
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.8
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +3
Query: 321 GGVHDFTDNPDKPWK 365
GGV D P+K WK
Sbjct: 56 GGVKDLRITPNKLWK 70
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.8
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +3
Query: 321 GGVHDFTDNPDKPWK 365
GGV D P+K WK
Sbjct: 56 GGVKDLRITPNKLWK 70
>DQ069332-1|AAZ32217.1| 296|Apis mellifera RNA polymerase II large
subunit protein.
Length = 296
Score = 21.4 bits (43), Expect = 8.8
Identities = 7/20 (35%), Positives = 13/20 (65%)
Frame = -3
Query: 314 ETERDIEDLIQWSHNCSFEP 255
+ + D+ ++IQ +HN EP
Sbjct: 169 KAKEDVIEVIQKAHNMELEP 188
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 8.8
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +3
Query: 321 GGVHDFTDNPDKPWK 365
GGV D P+K WK
Sbjct: 124 GGVKDLRITPNKLWK 138
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 8.8
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +3
Query: 321 GGVHDFTDNPDKPWK 365
GGV D P+K WK
Sbjct: 124 GGVKDLRITPNKLWK 138
>DQ013068-1|AAY81956.1| 931|Apis mellifera dusty protein kinase
isoform B protein.
Length = 931
Score = 21.4 bits (43), Expect = 8.8
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -1
Query: 697 DLISPLTIYLSTHLL 653
+L+SPLT+ TH+L
Sbjct: 9 ELLSPLTLNRITHIL 23
>DQ013067-1|AAY81955.1| 969|Apis mellifera dusty protein kinase
isoform A protein.
Length = 969
Score = 21.4 bits (43), Expect = 8.8
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -1
Query: 697 DLISPLTIYLSTHLL 653
+L+SPLT+ TH+L
Sbjct: 47 ELLSPLTLNRITHIL 61
>AY898652-1|AAX83121.1| 349|Apis mellifera AKH receptor protein.
Length = 349
Score = 21.4 bits (43), Expect = 8.8
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = +1
Query: 97 GIENWNKEYHNYT 135
G+ENW NYT
Sbjct: 12 GLENWRVNNSNYT 24
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,741
Number of Sequences: 438
Number of extensions: 4106
Number of successful extensions: 20
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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